View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_high_3 (Length: 472)
Name: NF4297_high_3
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 462
Target Start/End: Complemental strand, 46328135 - 46327693
Alignment:
| Q |
20 |
ttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatcacatatgtagtgccaacttcagccatctgagcttc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46328135 |
ttccatactctcccttgggaaaaattggaggaccagttttccgagttgtgaggatatttttcatcacatatgtagtgccaacttcagccatctgagcttc |
46328036 |
T |
|
| Q |
120 |
catttcgcccggttcctgtgataaagatatnnnnnnnctattatgatatagagatttataattacaacaattatgattcaaaatatgaggaatgataggg |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46328035 |
catttcgcccggttcctgtgataaagatataaaaaaactattatgatatagagatttataattacaacaattatgattcaaaatatgaggaatgataggg |
46327936 |
T |
|
| Q |
220 |
tccaattcgagtatcgttgcattccaaattttagagagggaagatacagctaaaagaaaggaaaatagactaacttcttaatttatacccattatgatat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46327935 |
tccaattcgagtatcgttgcattccaaattttagagagggaagatacagctaaaagaaaggaaaatagactaacttcttaatttatacccattatgatat |
46327836 |
T |
|
| Q |
320 |
catatgacgagtatataattaaaaccagtgcagacttgcaataaaacaactagaccctaatacattcagtattactctctaaagagaatgcacagtattc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46327835 |
catatgacgagtatataattaaaaccagtgcagacttgcaataaaacaactagaccctaatacattcagcattactctctaaagagaatgcacagtattc |
46327736 |
T |
|
| Q |
420 |
attctatattaagttgattgagtcatgcttgcttgtagaatta |
462 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46327735 |
attctatattaagttgatcgagtcatgcttgcttgtagaatta |
46327693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 46323657 - 46323534
Alignment:
| Q |
20 |
ttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatcacatatgtagtgccaacttcagccatctgagcttc |
119 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46323657 |
ttccaaactctcccttgggaaatattggaggaccagttttccgagttgtgagggtacttttcatcacatatgcagtgccaacttcagccatctgagcttc |
46323558 |
T |
|
| Q |
120 |
catttcgcccggttcctgtgataa |
143 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
46323557 |
cattttgcccggttcctgtgataa |
46323534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 46523294 - 46523416
Alignment:
| Q |
20 |
ttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatcacatatgtagtgccaacttcagccatctgagcttc |
119 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
46523294 |
ttccaaactctcccttgggaaatattggaggaccagttttccgagttgtgagggtacttttcatcacatatgcagtgccaacttcagccatctcagcttc |
46523393 |
T |
|
| Q |
120 |
catttcgcccggttcctgtgata |
142 |
Q |
| |
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||||| ||| ||||||||||||| |
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|
| T |
46523394 |
cattttgcctggttcctgtgata |
46523416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 46530722 - 46530844
Alignment:
| Q |
20 |
ttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatcacatatgtagtgccaacttcagccatctgagcttc |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
46530722 |
ttccatactctcccttgggaaatattgggggaccagtttggcgagttgtgaggatatttttcatcacatatgcagtgccaacttcagccatctcagcttc |
46530821 |
T |
|
| Q |
120 |
catttcgcccggttcctgtgata |
142 |
Q |
| |
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||||| ||| ||||||||||||| |
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| T |
46530822 |
cattttgcctggttcctgtgata |
46530844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 46519750 - 46519878
Alignment:
| Q |
20 |
ttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatcacatatgtagtgccaacttcagccatctgagcttc |
119 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||||||||| | ||||||||||||| |||||||| |||||||| ||||||||| ||||| |||| |||||| |
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| T |
46519750 |
ttccaaactctcctttgggaagtattggaggaccagttttgcgagttgtgaggacatttttcagcacatatgcagtgccaacctcagctatctcagcttc |
46519849 |
T |
|
| Q |
120 |
catttcgcccggttcctgtgataaagata |
148 |
Q |
| |
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|||| ||| ||||||||| ||| ||||| |
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| T |
46519850 |
tattttgccaggttcctgtaatatagata |
46519878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 46464501 - 46464605
Alignment:
| Q |
20 |
ttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatcacatatgtagtgccaacttcagccatctgagcttc |
119 |
Q |
| |
|
|||| ||||| || ||||||| |||||||||||| || ||| ||||||||||||||||||| |||||| | |||||||||||| |||||| |||||| |
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| T |
46464501 |
ttccgtactcgccgttgggaagcattggaggaccaatttcccgtgttgtgaggatatttttcagcacataagcggtgccaacttcaaccatcttagcttc |
46464600 |
T |
|
| Q |
120 |
cattt |
124 |
Q |
| |
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||||| |
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|
| T |
46464601 |
cattt |
46464605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 7476364 - 7476284
Alignment:
| Q |
244 |
caaattttagagagggaagataca--gctaaaagaaaggaaaatagactaacttcttaatttatacccattatgatatcat |
322 |
Q |
| |
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|||| |||||||||| | |||||| |||||||||| |||||||||| ||||||||| ||| || |||||||||| |||| |
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| T |
7476364 |
caaaatttagagaggaatgatacatagctaaaagaacggaaaatagattaacttcttcattcatgtccattatgatgtcat |
7476284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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