View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_low_10 (Length: 375)
Name: NF4297_low_10
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 177139 - 177482
Alignment:
| Q |
17 |
tgaagaagaggaagaataacatatggtagaagttggtcaagccctcacatggtaccaactataatctgtctttgttcatgattgcagtgctttattctag |
116 |
Q |
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| T |
177139 |
tgaagaagaggaagaagaacatatggtagaagttggtcaagccctcacatggtaccaactataatctgtctttgttcatgattgcagtgctttattctag |
177238 |
T |
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| Q |
117 |
gttcttacttatgcttcatttgtgtttgaattttaatttgtgctcaaatcataaaaaataaataggattattaccagatcagaataatgaagtcaacaat |
216 |
Q |
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| T |
177239 |
gttcttacttatgcttcatttgtgtttgaattgtaatttgtgctcaaatcataaaaaataaataggattattaccagatcagaataatgaagtcaacaat |
177338 |
T |
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| Q |
217 |
acagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatttgatctgctgcttgctatctcatagttacattc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177339 |
acagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatttgatctgctgcttgctatctcatagttacattc |
177438 |
T |
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| Q |
317 |
tgtacagcattagcagcctatataaacacttttatgcattgatt |
360 |
Q |
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| T |
177439 |
tgtacagcattagcagcctatataaacacttgtatgcattgatt |
177482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 22295156 - 22295042
Alignment:
| Q |
184 |
ttattaccagatcagaataatgaagtcaacaatacagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatt |
283 |
Q |
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| T |
22295156 |
ttattaccagatcacaataatcaagtcaacaattcagttgactga-atagcttagcatacaagttactcttattaa-catagcttagcttagtttacttt |
22295059 |
T |
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| Q |
284 |
tgatctgctgcttgcta |
300 |
Q |
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|||| ||||| |||||| |
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| T |
22295058 |
tgatatgctgtttgcta |
22295042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 13646032 - 13646146
Alignment:
| Q |
184 |
ttattaccagatcagaataatgaagtcaacaatacagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatt |
283 |
Q |
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|||||||||||||| |||||| ||||||||||| ||||||||||| |||||||| |||||||||| |||| ||| |||||||||| |||||||| || |
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| T |
13646032 |
ttattaccagatcacaataatcaagtcaacaattcagttgactga-atagcttagcatacaagttactcttattaa-catagcttagcttagtttacttt |
13646129 |
T |
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| Q |
284 |
tgatctgctgcttgcta |
300 |
Q |
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| T |
13646130 |
tgatatgctgcttgcta |
13646146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 34695179 - 34695134
Alignment:
| Q |
202 |
aatgaagtcaacaatacagttgactgatttagcttagagtacaagt |
247 |
Q |
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| T |
34695179 |
aatgaagtcaacaatacagttgactgagttagcttacagtacaagt |
34695134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 34717591 - 34717546
Alignment:
| Q |
202 |
aatgaagtcaacaatacagttgactgatttagcttagagtacaagt |
247 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
34717591 |
aatgaagtcaacaatacagttgactgagttagcttacagtacaagt |
34717546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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