View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_low_15 (Length: 342)
Name: NF4297_low_15
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 42195176 - 42195484
Alignment:
| Q |
14 |
agatacattttacaacaagcttctagagggagaaagtggtataagtctaatagataggtttgatgcctcaagcttccctgtccgttttgccgttttggtg |
113 |
Q |
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| T |
42195176 |
agatacattttacaacaagcttctagagggagaaagtggtataagtctaatagataggtttgatgcctcaagcttccctgtccatttt--------ggtg |
42195267 |
T |
|
| Q |
114 |
gtcagatacgcgatttctcttcaaaaggttacattgatggcaagaatgatcggcgccttgatgattgcttgaaatattgtttagttgcaggcaagagggc |
213 |
Q |
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| T |
42195268 |
gtcagatacgcgatttctcttcaaaaggttacattgatggtaagaatgatcggcgcctcgatgattgcttgaaatattgtttagttgcaggcaagagggc |
42195367 |
T |
|
| Q |
214 |
ccttgaagatgctaatcttggaaatgaagtccttaacaatgtaagtcaaaggtannnnnnnaaaggtaccaatgagtatgactc----atagttactaat |
309 |
Q |
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| T |
42195368 |
ccttgaagatgctaatcttggaaatgaagtccttaacaatgtaagtcaaaggtatttttttaaaggtaccaatgagtatgactcatatatagttactaat |
42195467 |
T |
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| Q |
310 |
tacgattagtatttaag |
326 |
Q |
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| T |
42195468 |
tacgattagtatttaag |
42195484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 42185420 - 42185661
Alignment:
| Q |
14 |
agatacattttacaacaagcttctagagggagaaagtggtataagtctaatagataggtttgatgcctcaagcttccctgtccgttttgccgttttggtg |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||| |
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| T |
42185420 |
agatacattttacaccaagcttctagagggagaaagtggtataagcctaatagataagtttgatgcctcaagcttccccgtccgt--------tttggtg |
42185511 |
T |
|
| Q |
114 |
gtcagatacgcgatttctcttcaaaaggttacattgatggcaagaatgatcggcgccttgatgattgcttgaaatattgtttagttgcaggcaagagggc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||||| ||||||||||||||||||| || |||||||| |
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| T |
42185512 |
gtcagatacgcgatttctcttcaaaaggttacattgacggcaagactgatcggtgcctcgatgattgcatgaaatattgtttagttgcgggaaagagggc |
42185611 |
T |
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| Q |
214 |
ccttgaagatgctaatcttggaaatgaagtccttaacaatgtaagtcaaa |
263 |
Q |
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| T |
42185612 |
acttgaagatgctaatcttggatatgaaacccttaacaatgtaagtcaaa |
42185661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 42201129 - 42201374
Alignment:
| Q |
14 |
agatacattttacaacaagcttctagagggagaaagtggtataagtctaatagataggtttgatgcctcaagcttccctgtccgttttgccgttttggtg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42201129 |
agatacattttacaacaagcttctagagggagaaagtgggataagcctaatagataggtttgatgcctcaagcttccctgtccg----gccgttttggtg |
42201224 |
T |
|
| Q |
114 |
gtcagatacgcgatttctcttcaaaaggttacattgatggcaagaatgatcggcgccttgatgattgcttgaaatattgtttagttgcaggcaagagggc |
213 |
Q |
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|||||||||| |||||||| ||| ||||||| |||||| ||||||||| | |||||| ||| |||||| || |||| |||||||||||| |||||||| |
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| T |
42201225 |
gtcagatacgtgatttctcctcagaaggttatattgattccaagaatgaccagcgcctcgataattgctggaggtattctttagttgcaggtaagagggc |
42201324 |
T |
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| Q |
214 |
ccttgaagatgctaatcttggaaatgaagtccttaacaatgtaagtcaaa |
263 |
Q |
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|||||||||| |||||||||| |||||||||||||||| |||||||||| |
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| T |
42201325 |
acttgaagatgttaatcttggatatgaagtccttaacaaggtaagtcaaa |
42201374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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