View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_low_16 (Length: 288)
Name: NF4297_low_16
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 26721369 - 26721098
Alignment:
| Q |
1 |
aacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaaatcaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721369 |
aacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaaatcaatca |
26721270 |
T |
|
| Q |
101 |
gaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacagcaaaaacagggcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26721269 |
gaacaacaaattactttcatttgtaatttaagaaaccaatttttagaataaaaattaaagacctaactaaatactttttgaacagcaaaaacagggcact |
26721170 |
T |
|
| Q |
201 |
gctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721169 |
gctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtg |
26721098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 45117576 - 45117849
Alignment:
| Q |
1 |
aacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaaa--tcaat |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45117576 |
aacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaaaactcaat |
45117675 |
T |
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| Q |
99 |
cagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacagcaaaaacagggca |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45117676 |
cagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaagaaaaattaaagacctaactaaatactttttgaacagcaaaaacagggca |
45117775 |
T |
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| Q |
199 |
ctgctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtg |
272 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
45117776 |
ctgctgctaggccaaaacacaatcgcctatacaccaaaacagccaaaacccataagaacaacatggcgttggtg |
45117849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 2986488 - 2986215
Alignment:
| Q |
1 |
aacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaaa--tcaat |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2986488 |
aacccaaacttactaaaatttatatattattgatctaatcctatatataaattcactataacatttggaaattgaaaaggatgaaaactaaaaactcaat |
2986389 |
T |
|
| Q |
99 |
cagaacaacaaattactttcatttgtaatttaagaaaccattttttagaataaaaactaaagacctaacaaaatactttttgaacagcaaaaacagggca |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2986388 |
cagaacaacaaattactttcatttgtaatttaagaaaccaatttttagaagaaaaattaaagacctaactaaatactttttgaacagcaaaaacagggca |
2986289 |
T |
|
| Q |
199 |
ctgctgctaggccaaaacacaatcgcctatacactaaaacagccaaaacccataacaacaacatggcgttggtg |
272 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |
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| T |
2986288 |
ctgctgctaggccaaaacacaatcgcctatacaccaaaacagccaaaacccataagaacaacatgacgttggtg |
2986215 |
T |
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