View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4297_low_17 (Length: 282)

Name: NF4297_low_17
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4297_low_17
NF4297_low_17
[»] chr6 (29 HSPs)
chr6 (1-282)||(4492731-4493012)
chr6 (1-96)||(4505819-4505914)
chr6 (1-75)||(4480676-4480750)
chr6 (1-66)||(3171733-3171798)
chr6 (1-66)||(4504472-4504537)
chr6 (2-58)||(4563711-4563767)
chr6 (7-66)||(4461115-4461174)
chr6 (7-74)||(4515202-4515269)
chr6 (1-60)||(4617020-4617079)
chr6 (1-70)||(4625939-4626008)
chr6 (2-58)||(4560506-4560562)
chr6 (1-52)||(4490430-4490481)
chr6 (1-75)||(4516304-4516378)
chr6 (1-63)||(4601784-4601846)
chr6 (1-74)||(4299815-4299888)
chr6 (1-58)||(4557125-4557182)
chr6 (1-58)||(4570972-4571029)
chr6 (2-58)||(4592231-4592287)
chr6 (1-64)||(4267241-4267304)
chr6 (1-60)||(4392101-4392160)
chr6 (7-46)||(4568065-4568104)
chr6 (7-52)||(4469809-4469854)
chr6 (1-58)||(4606966-4607023)
chr6 (2-58)||(4574308-4574364)
chr6 (2-58)||(4585636-4585692)
chr6 (2-58)||(4613794-4613850)
chr6 (1-55)||(4622145-4622199)
chr6 (5-58)||(4579432-4579485)
chr6 (2-54)||(4598175-4598227)
[»] chr8 (4 HSPs)
chr8 (119-282)||(32274279-32274442)
chr8 (1-63)||(1674221-1674283)
chr8 (1-58)||(16686342-16686399)
chr8 (6-58)||(20863923-20863975)
[»] chr5 (3 HSPs)
chr5 (121-273)||(8333200-8333352)
chr5 (1-63)||(28000174-28000236)
chr5 (1-55)||(24103002-24103056)
[»] chr3 (1 HSPs)
chr3 (1-63)||(1281109-1281171)
[»] chr7 (1 HSPs)
chr7 (1-52)||(3086426-3086477)
[»] scaffold0477 (1 HSPs)
scaffold0477 (5-55)||(4765-4815)
[»] scaffold0288 (1 HSPs)
scaffold0288 (1-55)||(3794-3848)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 4493012 - 4492731
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaaaatgattttatgtctgcaaaagagtattgtgttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4493012 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaaaatgattttatgtctgcaaaagagtattgtattt 4492913  T
Q  101 tttgccagtattatcggtattctttaaatgcaaagctgaatagatcaggagttgaaaatccatggttcgtttttggtggctcatattctggagcactcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  4492912 tttgccagtattatcggtattctttaaatgcaaagctgaatagatcaggagttgaaaatccatggttctttttcagtggctcatattctggagcactcag 4492813  T
Q  201 tgcatagttccgtcttaagtttccccatttaacatgtgaaagtcttgccagttctgccgttgttcttgctgttcaagacttc 282  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4492812 tgcatggttccgtcttaagtttccccatttaacatgtgaatgtcttgccagttctgccgttgttcttgctgttcaagacttc 4492731  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 4505914 - 4505819
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaaaatgattttatgtctgcaaaagagtattgt 96  Q
    ||||||||||| |||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4505914 tggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaattagattaaaatgattttatgtctgcaaaagtgtattgt 4505819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4480750 - 4480676
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaaaatgatttt 75  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||  |||||||    
T  4480750 tggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaattagattaatgtgatttt 4480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3171798 - 3171733
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaa 66  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||    
T  3171798 tggttgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaacaatattagattaa 3171733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4504472 - 4504537
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaa 66  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||| || ||||||||||    
T  4504472 tggttgttcatacatgaacttggacaaagtgattaaggacgtcttgcttaaaaaatattagattaa 4504537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 4563767 - 4563711
Alignment:
Q  2 ggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  4563767 ggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaaaat 4563711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 4461174 - 4461115
Alignment:
Q  7 ttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaa 66  Q
    |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  4461174 ttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaacaaaattagattaa 4461115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 4515202 - 4515269
Alignment:
Q  7 ttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaaaatgattt 74  Q
    ||||||| ||||||||||||||||||||||||| || |||||||||||||||||| | ||| ||||||    
T  4515202 ttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaattagttcaaagtgattt 4515269  T

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Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4617079 - 4617020
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaatta 60  Q
    |||||||||||||||||||||| ||||||| || |||||||| |||||||||||||||||    
T  4617079 tggttgttcatacatgaacttgaacaaagttattaaggatgtgttgcttaaacaaaatta 4617020  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4626008 - 4625939
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaaaatg 70  Q
    ||||||||||||||||||  |||| ||| |||| || |||||||||||||||||| ||||||||||||||    
T  4626008 tggttgttcatacatgaatatggataaactgattaatgatgtcttgcttaaacaatattagattaaaatg 4625939  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 4560562 - 4560506
Alignment:
Q  2 ggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    ||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||    
T  4560562 ggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat 4560506  T

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Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4490430 - 4490481
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaa 52  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  4490430 tggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

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Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4516378 - 4516304
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaaaatgatttt 75  Q
    ||||||||||||  |||||||||| |||||||| ||||| ||  |||| |||||||||||||||||| |||||||    
T  4516378 tggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaaaattagattaaagtgatttt 4516304  T

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Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4601846 - 4601784
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagat 63  Q
    |||||||||||||| |||| |||||||||| || ||||| || ||||||||||||||||||||    
T  4601846 tggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaaaattagat 4601784  T

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Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4299815 - 4299888
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagattaaaatgattt 74  Q
    ||||||||| |||||||||||||||||||| || ||||| ||  ||||||||||| |||||| |||| ||||||    
T  4299815 tggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaatattagaataaagtgattt 4299888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4557182 - 4557125
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    |||||||||||||||||| ||||| |||||||| ||||| || |||||||||||||||    
T  4557182 tggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaat 4557125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4571029 - 4570972
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||| |||||    
T  4571029 tggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaat 4570972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 4592287 - 4592231
Alignment:
Q  2 ggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    ||||||||||| ||||||||||||||| |||||||||| || ||||||||| |||||    
T  4592287 ggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat 4592231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4267241 - 4267304
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagatt 64  Q
    ||||| |||||||||||||||||||||||| || ||||| ||| ||||||||||| | ||||||    
T  4267241 tggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaatactagatt 4267304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4392101 - 4392160
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaatta 60  Q
    ||||| ||||| |||||||||||||||| |||| ||||| |||||||||||||| |||||    
T  4392101 tggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaacataatta 4392160  T

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Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 4568104 - 4568065
Alignment:
Q  7 ttcatacatgaacttggacaaagtgatcaaggatgtcttg 46  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  4568104 ttcatacatgaacttggacaaagtgattaaggatgtcttg 4568065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 4469854 - 4469809
Alignment:
Q  7 ttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaa 52  Q
    |||||||| ||||||||||||||| || ||||||||||||||||||    
T  4469854 ttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaa 4469809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4606966 - 4607023
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    ||||| |||||||||||||||||| |||||||| ||| | || |||||||||||||||    
T  4606966 tggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaat 4607023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 4574364 - 4574308
Alignment:
Q  2 ggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    |||||||||||||  |||||||| |||||||| ||||| || |||||||||||||||    
T  4574364 ggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaaat 4574308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 4585692 - 4585636
Alignment:
Q  2 ggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    |||||||||||||| |||||||| |||||||| ||||| || ||||||||| |||||    
T  4585692 ggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaataaaat 4585636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 4613794 - 4613850
Alignment:
Q  2 ggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    ||||||||||| ||||||||||||||||||||||| || ||  |||| |||||||||    
T  4613794 ggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaaaat 4613850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4622199 - 4622145
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaa 55  Q
    ||||||||||||||  |||||||||||||| || ||||| ||| |||||||||||    
T  4622199 tggttgttcatacaacaacttggacaaagttattaaggaggtcatgcttaaacaa 4622145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 4579485 - 4579432
Alignment:
Q  5 tgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    |||||||||||||||||||| |||||||| ||||| || || || |||||||||    
T  4579485 tgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaaaat 4579432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 4598227 - 4598175
Alignment:
Q  2 ggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaaca 54  Q
    |||||||||||||||||||| || |||||||| ||||| || || ||||||||    
T  4598227 ggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaaca 4598175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 119 - 282
Target Start/End: Original strand, 32274279 - 32274442
Alignment:
Q  119 attctttaaatgcaaagctgaatagatcaggagttgaaaatccatggttcgtttttggtggctcatattctggagcactcagtgcatagttccgtcttaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  32274279 attctttaaatgcaaagctgaatagatcaggagttgaaaatccatggttctttttcggtggctcatattctggagcactcagtgcatggttccgtcttaa 32274378  T
Q  219 gtttccccatttaacatgtgaaagtcttgccagttctgccgttgttcttgctgttcaagacttc 282  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  32274379 gtttccccatttaacatgcggaagtcttgccagttctgccgttgttcttgctgttcaagacttc 32274442  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1674283 - 1674221
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagat 63  Q
    ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  1674283 tggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaaaattagat 1674221  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16686342 - 16686399
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    |||||||||||||||||||||||| |||||||| | ||| || |||||||||||||||    
T  16686342 tggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 16686399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 20863923 - 20863975
Alignment:
Q  6 gttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 58  Q
    ||||||| |||||||||||||||||||| ||||| || |||||||||||||||    
T  20863923 gttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaat 20863975  T

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Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 121 - 273
Target Start/End: Complemental strand, 8333352 - 8333200
Alignment:
Q  121 tctttaaatgcaaagctgaatagatcaggagttgaaaatccatggttcgtttttggtggctcatattctggagcactcagtgcatagttccgtcttaagt 220  Q
    ||||||||||||||||| |||||| ||   |  || ||||| |||||||| |||||||  |||||| ||||||| |||||||||| ||||||||||||||    
T  8333352 tctttaaatgcaaagcttaatagaacaaatgccgacaatccctggttcgtatttggtgtttcatatcctggagctctcagtgcatggttccgtcttaagt 8333253  T
Q  221 ttccccatttaacatgtgaaagtcttgccagttctgccgttgttcttgctgtt 273  Q
    |||| ||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  8333252 ttccgcatttaacatgtggaagtcttgcaagttctgcagttgttcttgctgtt 8333200  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28000174 - 28000236
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagat 63  Q
    ||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||    
T  28000174 tggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaaaattagat 28000236  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24103056 - 24103002
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaa 55  Q
    ||||| |||||||||||||||||||||||| || ||||| ||| |||||||||||    
T  24103056 tggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 24103002  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1281171 - 1281109
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagat 63  Q
    ||||||||||||||||||||| ||||||||||| |||||  | ||||||||||||||||||||    
T  1281171 tggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaaaattagat 1281109  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3086477 - 3086426
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaa 52  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||    
T  3086477 tggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa 3086426  T

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Target: scaffold0477 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 4765 - 4815
Alignment:
Q  5 tgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaa 55  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  4765 tgttcatacatgaacttggacaaagtgattaaggaggtcatgcttaaacaa 4815  T

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Target: scaffold0288 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3794 - 3848
Alignment:
Q  1 tggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaa 55  Q
    |||| |||||||||||||| |||||||||| || ||||| || ||||||||||||    
T  3794 tggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 3848  T

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