View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4297_low_18 (Length: 278)

Name: NF4297_low_18
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4297_low_18
NF4297_low_18
[»] scaffold0205 (1 HSPs)
scaffold0205 (20-244)||(21409-21633)
[»] chr4 (5 HSPs)
chr4 (180-226)||(24875735-24875781)
chr4 (180-230)||(12710010-12710060)
chr4 (188-225)||(51383998-51384035)
chr4 (185-229)||(35212734-35212778)
chr4 (180-244)||(36768851-36768915)
[»] chr3 (5 HSPs)
chr3 (180-229)||(35990527-35990576)
chr3 (180-229)||(32343332-32343381)
chr3 (173-230)||(47542542-47542599)
chr3 (190-230)||(26643290-26643330)
chr3 (195-227)||(42088735-42088767)
[»] chr5 (5 HSPs)
chr5 (173-229)||(16315881-16315937)
chr5 (188-229)||(2611090-2611131)
chr5 (174-223)||(19625927-19625976)
chr5 (188-231)||(39828472-39828515)
chr5 (174-218)||(28452603-28452647)
[»] chr2 (3 HSPs)
chr2 (184-242)||(41508531-41508589)
chr2 (188-230)||(3103532-3103574)
chr2 (188-229)||(43591371-43591412)
[»] chr7 (2 HSPs)
chr7 (122-217)||(21968802-21968897)
chr7 (188-229)||(9483392-9483433)
[»] chr1 (3 HSPs)
chr1 (175-229)||(43328475-43328529)
chr1 (171-229)||(43609811-43609869)
chr1 (185-229)||(17080888-17080932)
[»] scaffold0024 (1 HSPs)
scaffold0024 (193-229)||(151415-151451)
[»] chr8 (2 HSPs)
chr8 (189-229)||(10170397-10170437)
chr8 (193-229)||(33697156-33697192)
[»] chr6 (1 HSPs)
chr6 (173-213)||(5897223-5897263)


Alignment Details
Target: scaffold0205 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 21633 - 21409
Alignment:
Q  20 atacggtcaccctatttgcaatcctgtatgaagtttacaatcctagtaagtaatcttttttacaattgacgattttaagaaaattttctatgtcgcactg 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |    
T  21633 atacggtcaccctatttgcaatcctgtatgaggtttacaatcctagtaagtaatcttttatacaattgacgattttaagataattttctatgtcgcaccg 21534  T
Q  120 atacttcagattgaaggtttgtttggtgttcgacatgtgttagtgtttaatattgacacaacactgatacatgtggttacattcaattattttattttca 219  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21533 atacttcagattgaaggtttgtttggtgttcgacacgtgtcagtgtttaatattgacacaacactgatacatgtggttacattcaattattttattttct 21434  T
Q  220 caaattattacatatgttaatgtgt 244  Q
    |||| ||||||||||||||||||||    
T  21433 caaactattacatatgttaatgtgt 21409  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 24875781 - 24875735
Alignment:
Q  180 acactgatacatgtggttacattcaattattttattttcacaaatta 226  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  24875781 acactgatacatgtggttacattcaattattctattttctcaaatta 24875735  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 12710060 - 12710010
Alignment:
Q  180 acactgatacatgtggttacattcaattattttattttcacaaattattac 230  Q
    ||||||||| ||||| |||| |||||||| ||||||||| |||||||||||    
T  12710060 acactgatatatgtgtttacgttcaattaatttattttctcaaattattac 12710010  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 51383998 - 51384035
Alignment:
Q  188 acatgtggttacattcaattattttattttcacaaatt 225  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  51383998 acatgtgattacattcaattatttcattttcacaaatt 51384035  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 35212734 - 35212778
Alignment:
Q  185 gatacatgtggttacattcaattattttattttcacaaattatta 229  Q
    |||||| ||| |||||||||||||||| |||||| ||||||||||    
T  35212734 gatacaagtgattacattcaattatttaattttctcaaattatta 35212778  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 36768851 - 36768915
Alignment:
Q  180 acactgatacatgtggttacattcaattattttattttcacaaattattacatatgttaatgtgt 244  Q
    ||||||| ||||||| ||||||||||||| || ||| || |||||||||||  |||| |||||||    
T  36768851 acactgacacatgtgattacattcaattaattaattctctcaaattattactgatgtcaatgtgt 36768915  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 35990527 - 35990576
Alignment:
Q  180 acactgatacatgtggttacattcaattattttattttcacaaattatta 229  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  35990527 acactgacacatgtggttacattcagttattttattttctcaaattatta 35990576  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 32343332 - 32343381
Alignment:
Q  180 acactgatacatgtggttacattcaattattttattttcacaaattatta 229  Q
    |||| ||||||||||| ||||||||| || ||||||||| ||||||||||    
T  32343332 acaccgatacatgtggctacattcaaatactttattttctcaaattatta 32343381  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 47542599 - 47542542
Alignment:
Q  173 tgacacaacactgatacatgtggttacattcaattattttattttcacaaattattac 230  Q
    ||||||||||| || ||||||| |||||||||| || || |||||| |||||||||||    
T  47542599 tgacacaacaccgacacatgtgattacattcaaatagttcattttctcaaattattac 47542542  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 26643290 - 26643330
Alignment:
Q  190 atgtggttacattcaattattttattttcacaaattattac 230  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  26643290 atgtggttacattcaattattctattttcttaaattattac 26643330  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 42088767 - 42088735
Alignment:
Q  195 gttacattcaattattttattttcacaaattat 227  Q
    |||||||||||||||||||||||| ||||||||    
T  42088767 gttacattcaattattttattttctcaaattat 42088735  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 16315937 - 16315881
Alignment:
Q  173 tgacacaacactgatacatgtggttacattcaattattttattttcacaaattatta 229  Q
    ||||||||||| ||||||||||||||||||||||||| | |||| | ||||||||||    
T  16315937 tgacacaacacagatacatgtggttacattcaattatatcatttcctcaaattatta 16315881  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 2611090 - 2611131
Alignment:
Q  188 acatgtggttacattcaattattttattttcacaaattatta 229  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  2611090 acatgtggttacattcaataattttattttctcaaattatta 2611131  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 19625927 - 19625976
Alignment:
Q  174 gacacaacactgatacatgtggttacattcaattattttattttcacaaa 223  Q
    ||||||||||||| |||||||||||||||||||||||  |||||| ||||    
T  19625927 gacacaacactgacacatgtggttacattcaattattccattttctcaaa 19625976  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 39828515 - 39828472
Alignment:
Q  188 acatgtggttacattcaattattttattttcacaaattattaca 231  Q
    |||||||||||||||||||||||| || ||| ||||||||||||    
T  39828515 acatgtggttacattcaattatttcatattctcaaattattaca 39828472  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 28452647 - 28452603
Alignment:
Q  174 gacacaacactgatacatgtggttacattcaattattttattttc 218  Q
    ||||||||||  | ||||||||| |||||||||||||||||||||    
T  28452647 gacacaacaccaacacatgtggtaacattcaattattttattttc 28452603  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 41508589 - 41508531
Alignment:
Q  184 tgatacatgtggttacattcaattattttattttcacaaattattacatatgttaatgt 242  Q
    |||| ||||| |||||||||||||||| ||||||| ||||||||||||| |||| ||||    
T  41508589 tgatgcatgtagttacattcaattattctattttctcaaattattacatgtgttgatgt 41508531  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 3103532 - 3103574
Alignment:
Q  188 acatgtggttacattcaattattttattttcacaaattattac 230  Q
    ||||| |||||||||||||||| |||||||| |||||||||||    
T  3103532 acatgcggttacattcaattatcttattttctcaaattattac 3103574  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 43591412 - 43591371
Alignment:
Q  188 acatgtggttacattcaattattttattttcacaaattatta 229  Q
    ||||||| || ||||||||||| |||||||||||||||||||    
T  43591412 acatgtgattgcattcaattatgttattttcacaaattatta 43591371  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 21968897 - 21968802
Alignment:
Q  122 acttcagattgaaggtttgtttggtgttcgacatgtgttagtgtttaatattgacacaacactgatacatgtggttacattcaattattttatttt 217  Q
    |||| ||||||||||  ||| ||||||  |||| |||| ||||||| ||| |||| |||||| || ||| |||||||||||||| |||||| ||||    
T  21968897 actttagattgaaggcgtgtctggtgtctgacacgtgtcagtgtttgatactgacgcaacaccgaaacacgtggttacattcaaatattttctttt 21968802  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 9483433 - 9483392
Alignment:
Q  188 acatgtggttacattcaattattttattttcacaaattatta 229  Q
    |||| |||||||||||||||||| ||||||| ||||||||||    
T  9483433 acatatggttacattcaattattctattttctcaaattatta 9483392  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 43328529 - 43328475
Alignment:
Q  175 acacaacactgatacatgtggttacattcaattattttattttcacaaattatta 229  Q
    |||| ||| ||| ||||||||||||||| |||||||| |||||| ||||||||||    
T  43328529 acacgacaatgacacatgtggttacattaaattatttcattttctcaaattatta 43328475  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 43609811 - 43609869
Alignment:
Q  171 attgacacaacactgatacatgtggttacattcaattattttattttcacaaattatta 229  Q
    ||||| ||||||  || ||||||| |||||||||||||| |||||||| ||||||||||    
T  43609811 attgatacaacatggacacatgtgattacattcaattatgttattttctcaaattatta 43609869  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 17080888 - 17080932
Alignment:
Q  185 gatacatgtggttacattcaattattttattttcacaaattatta 229  Q
    |||||| ||| |||||||||||||| |||||||| ||||||||||    
T  17080888 gatacaagtgattacattcaattatgttattttctcaaattatta 17080932  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 151415 - 151451
Alignment:
Q  193 tggttacattcaattattttattttcacaaattatta 229  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  151415 tggttacatttaattattttattttctcaaattatta 151451  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 10170397 - 10170437
Alignment:
Q  189 catgtggttacattcaattattttattttcacaaattatta 229  Q
    ||||| |||||||||||||| ||||||||| ||||||||||    
T  10170397 catgtagttacattcaattaatttattttctcaaattatta 10170437  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 33697156 - 33697192
Alignment:
Q  193 tggttacattcaattattttattttcacaaattatta 229  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  33697156 tggttatattcaattattttattttctcaaattatta 33697192  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 5897223 - 5897263
Alignment:
Q  173 tgacacaacactgatacatgtggttacattcaattatttta 213  Q
    |||||||||||||| || |||||||| ||||||||||||||    
T  5897223 tgacacaacactgagacgtgtggttatattcaattatttta 5897263  T

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