View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_low_2 (Length: 720)
Name: NF4297_low_2
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 41 - 377
Target Start/End: Original strand, 24199983 - 24200319
Alignment:
| Q |
41 |
aacagatgacttagtcatcacaccaggttcctcaaccgatgccatttcctttctgactaaaatgagaattcctctctctgatttggaagaaagaaggatt |
140 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24199983 |
aacagatgacttagccatcacaccaggttcctcaaccgatgcgatttcctttctgactaaaatgagaattcctctctctgatttggaagaaagaaggatt |
24200082 |
T |
|
| Q |
141 |
agcattggcaataaagaggtaaacttgcagttgtcgatttaatttcttttatttcgacaaagctccttagattattcattattatgatttagttcagatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24200083 |
agcattggcaataaagaggtaaacttgcagttgtcgatttaatttcttttatttcgacaaagctccttagattattcattattatgatttagttcagatt |
24200182 |
T |
|
| Q |
241 |
ccccttcaatataagtaattttttattgtcaatcataaaaactcttgggactttggtcataaactatttataaaatcacatgtatgaatgattgtgataa |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24200183 |
ccccttcaatataagtaattttttattgtcaatcataaaaactcttgggactttggtcataaactatttataaaatcacatgtatgaatgattgtgataa |
24200282 |
T |
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| Q |
341 |
ttgacaacgcaaaatattttgtattgacaagttcatg |
377 |
Q |
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| T |
24200283 |
ttgacaacgcaaaatattttgtattgacaagttcatg |
24200319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 400 - 712
Target Start/End: Original strand, 24200343 - 24200660
Alignment:
| Q |
400 |
gtggaactgcaggctcatagtcttctgaaatcttcgttgatctcatcatcagctctcactaatggtcttggtccatttcttgcaaccaatgacaagaaaa |
499 |
Q |
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| T |
24200343 |
gtggaactgcaggctcatagtcttctgaaagcttcgttgatctcatcatcagctctcactaatggtcttggtccatttcttgcaaccaatgacaagaaaa |
24200442 |
T |
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| Q |
500 |
tcttaaactaatgcccttcatgatttgaaacaatcaaataaagctaaatcattgagattatgctatattctttgtttgatgattatgaattttgcatatt |
599 |
Q |
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| T |
24200443 |
tcttaaactaatgcccttcatgatttgaaacaatcaaataaagctaaatcattaagattatgctatattctttgtttgatgattatgaattttgcatatt |
24200542 |
T |
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| Q |
600 |
tagagtcaagg-ctttgcattaa----taattatcttgtttgccttatgccaatgatacattctagttctattatgtttcgaagctagtcattccggtat |
694 |
Q |
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| T |
24200543 |
tagagtcaaggactttgcattaataattaattatcttgtttgccttatgccaatgatacattctagtcctattatgtttcgaagctagtcactccggtat |
24200642 |
T |
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| Q |
695 |
tactcttcacttcatctc |
712 |
Q |
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|||||||||||||||||| |
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| T |
24200643 |
tactcttcacttcatctc |
24200660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 400 - 711
Target Start/End: Original strand, 24192240 - 24192552
Alignment:
| Q |
400 |
gtggaactgcaggctcatagtcttctgaaatcttcgttgatctcatcatcagctctcactaatggtcttggtccatttcttgcaaccaatgacaagaaaa |
499 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24192240 |
gtggaactgcaggctcatagtcttcttaaagcttctttgatctcatcatcagctctaactaatggtcttggtccatttctttcaaccaatgacaagaaaa |
24192339 |
T |
|
| Q |
500 |
tcttaaactaatgcccttcatgatttgaaacaatcaaataaagctaaatcattgagattatgctatattctttgtttgatgattatgaattttgcatatt |
599 |
Q |
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| T |
24192340 |
tgttaaactagtgcacttcatgatttgaaacaatcaaataaagctaaatcattgagattatgctttattctttgtttgcagattatgaatttcgcatatt |
24192439 |
T |
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| Q |
600 |
tagagtcaagg-ctttgcattaataattatcttgtttgccttatgccaatgatacattctagttctattatgtttcgaagctagtcattccggtattact |
698 |
Q |
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|| || |||| |||||||||||||| | |||||||||||| ||||| |||||| |||| |||||||||||||||||||||||| | | |||||| |
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| T |
24192440 |
tattgttaaggactttgcattaataactggcttgtttgccttcctccaatcttacattgtagtcctattatgtttcgaagctagtcatatcagaattact |
24192539 |
T |
|
| Q |
699 |
cttcacttcatct |
711 |
Q |
| |
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||||||||||||| |
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| T |
24192540 |
cttcacttcatct |
24192552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 24192050 - 24192209
Alignment:
| Q |
41 |
aacagatgacttagtcatcacaccaggttcctcaaccgatgccatttcctttctgactaaaatgagaattcctctctctgatttggaagaaagaaggatt |
140 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
24192050 |
aacagatgacttagtcatcacaccaggttcctcaaccgatgcgatttcctttctgactaaaatgagaattcctctctctgatttgcaagaaagaatgatt |
24192149 |
T |
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| Q |
141 |
agcattggcaataaagaggtaaacttgcagttgtcgatttaatttcttttatttcgacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
24192150 |
agcattggcaataaagaggtaaacttgcagttgtcaatttcatttcttttatttcgacaa |
24192209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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