View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_low_21 (Length: 256)
Name: NF4297_low_21
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 54692793 - 54693000
Alignment:
| Q |
14 |
tgagatgaattgcagtattatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgt |
113 |
Q |
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| T |
54692793 |
tgagatgaattgcagtattatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgt |
54692892 |
T |
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| Q |
114 |
ttgtagacaagatgttataatatttggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatt |
213 |
Q |
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| T |
54692893 |
ttgtagacaagatgttataatatttggtagtgcccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatt |
54692992 |
T |
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| Q |
214 |
tctttgcc |
221 |
Q |
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|||||||| |
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| T |
54692993 |
tctttgcc |
54693000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 54700152 - 54700368
Alignment:
| Q |
15 |
gagatgaattgcagtattatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtt |
114 |
Q |
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| T |
54700152 |
gagataaattgcaatattgtctgaaatgtagatagggttgccacttcaacatcttgtaataagctaatcaaagccact-----gtttgatggtcattgtt |
54700246 |
T |
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| Q |
115 |
tgtagacaagatgttataatatttggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaattt |
214 |
Q |
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| T |
54700247 |
tgtagataagatgttgctatgtttggtatttcccttcaaatttgccaaggctttggagatggcctttttcactacc----tttcttgatgtcatgaattt |
54700342 |
T |
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| Q |
215 |
ctttgcctctgctgtgagctccaatc |
240 |
Q |
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| T |
54700343 |
cttagcctctgcagtgagctccaatc |
54700368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 54688230 - 54688379
Alignment:
| Q |
38 |
aaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatt |
137 |
Q |
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|||||||||||| || |||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||| || || |
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| T |
54688230 |
aaatgtagatagggttgccacttcaacatcttgtaataagttaatcaaag-----ccactgtttgatggtctttgtttgtagataagatgttgctatttt |
54688324 |
T |
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| Q |
138 |
tggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactacctt |
192 |
Q |
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| T |
54688325 |
tggcatttcccttcaaatttaccaaggttttggagattgactttctcactacctt |
54688379 |
T |
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