View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_low_25 (Length: 249)
Name: NF4297_low_25
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 24300947 - 24300706
Alignment:
| Q |
1 |
attgtcccactgggatattgaaaagaatcaaatctatttacatttcaattaccaagtctctgagctttgtgctttctcccttttcaatacagtttgtaaa |
100 |
Q |
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| T |
24300947 |
attgtcccactgggatattgaaaagaatcaaatctatttacatttcaattaccaagtctctgagctttgtgctttctcccttttcaatacagtttgtaaa |
24300848 |
T |
|
| Q |
101 |
gctccattaccaccgattttgccacaaaagtcaaaaaagcagtagaaaaacatctcactatgttgttctctcatggagaaggtaagagataaagaaagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24300847 |
gctccattaccaccgattttgccacaaaagtcaaaaaagcagtagaaaaacatctcactatgttgttctctcatggagaaggtaagagataaagaaagta |
24300748 |
T |
|
| Q |
201 |
tgtgatggaaaaatt-aaaagagaggctcgtaaacctatgct |
241 |
Q |
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| T |
24300747 |
tgtgatggaaaaattaaaaagagaggctcgtaaacctatgct |
24300706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 19618731 - 19618875
Alignment:
| Q |
101 |
gctccattaccaccgattttgccacaaaagtcaaaaaagcagtagaaaaacatctcactatgttgttctctc---atggagaaggtaagagataaagaaa |
197 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
19618731 |
gctccattaccaccgattttgccacaaaagtaaaaaaagcagtagaaaaacatctcactatgttgctctctcatgatggagaaggtaagagataaagaaa |
19618830 |
T |
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| Q |
198 |
gtatgtgatggaaaaatt-aaaagagaggctcgtaaacctatgct |
241 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19618831 |
gtatgtgatggaaaaattaaaaagagaggctcgtaaacctatgct |
19618875 |
T |
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