View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_low_26 (Length: 245)
Name: NF4297_low_26
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 31704873 - 31704706
Alignment:
| Q |
62 |
tatttgtgaatgatcgtgtaggtcaaaagacaaacttatacatgtgttgtgtgaatcttatgaagtttatgtataggatatttttgtctcctattctgaa |
161 |
Q |
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| T |
31704873 |
tatttgtgaatgatcgtgtaggtcaaaagacaaacttatacatgtgttgtgtgaatcttatgaagtttatgtataagatatttttgtctcctattctgaa |
31704774 |
T |
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| Q |
162 |
ttacatggaaattttgtgtgcgtataaatgtttgatgtttgctacagatgttgccagaaggtcctatt |
229 |
Q |
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| T |
31704773 |
ttacatggaaaatttgtgtacgtataaatgtttgatgtttgctgcagatgttgccagaaggtcctatt |
31704706 |
T |
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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31704981 - 31704915
Alignment:
| Q |
1 |
gctttgaggtaagaccaattattactactaaattttaaagataatgaacgagttatgtgtttatttg |
67 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31704981 |
gctttgaggtaagaccaattattactactaaattttaaagataatgaacgagttatgtgtttgtttg |
31704915 |
T |
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