View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_low_3 (Length: 538)
Name: NF4297_low_3
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 41288240 - 41287847
Alignment:
| Q |
10 |
catcatcaagactaatatttcacgtgcttacatatatcccaaaatgtttaagaaaatggagtattttttt-aatcgtagatcnnnnnnnnncctttgtga |
108 |
Q |
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| T |
41288240 |
catcatcaagactaatatttcacgtgcttacatatatcccaaaatgtttaagaaaatggagtattttttttaatcgtagatctttttttttcctttgtga |
41288141 |
T |
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| Q |
109 |
aactgagaaatgtgatatgatggtcaattctagcatttcttggtgatccatcccaacaatggaattgtaataccacccgccggtctcatttaactttatg |
208 |
Q |
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| T |
41288140 |
aactgagaaatgtgatatgatggtcaattctagcatttcttggtgatccatcccaacaatggaattgcaataccatccgccggtctcatttaactttatg |
41288041 |
T |
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| Q |
209 |
gataatacttgggtgacattgtggtcggtaatattggccaactatgtcacaagtatgtagtttcaaatactcacttattttagaattactaacggaaaga |
308 |
Q |
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| T |
41288040 |
gataatatttgggtgacattgtggttggtgatattggccaaccatgtaacaggtatgtagtttcaaatactcacttattttagaattactaaccgaaagg |
41287941 |
T |
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| Q |
309 |
aagactattacatacaattttatatggtgtatttagcaattttgtaaattatgagtacgatcataaata-tctaatataatataacaataactt |
401 |
Q |
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| T |
41287940 |
aagactattacatacaattttatatggtgtatttagcaattttgtaaattatgagtatgatcataaatactctaatataatataacaataactt |
41287847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 432 - 521
Target Start/End: Complemental strand, 41287848 - 41287759
Alignment:
| Q |
432 |
ttgcttagtatttccttactgtttctctatattttaaggtaagtcatttatgtaaaattgattaactacaatccttctgcgatctgtttc |
521 |
Q |
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| T |
41287848 |
ttgcttagtatttccttactgtttctctatattttaaggtaagtcatttatgtaaaattgattaactacaatccttctgcgatctgtttc |
41287759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 5215560 - 5215597
Alignment:
| Q |
208 |
ggataatacttgggtgacattgtggtcggtaatattgg |
245 |
Q |
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| T |
5215560 |
ggataatacttgggtgacattgtggttggtaacattgg |
5215597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 11448063 - 11448098
Alignment:
| Q |
215 |
acttgggtgacattgtggtcggtaatattggccaac |
250 |
Q |
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| T |
11448063 |
acttgggtgacattgtggttggtaatattggccaac |
11448098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 11448224 - 11448187
Alignment:
| Q |
208 |
ggataatacttgggtgacattgtggtcggtaatattgg |
245 |
Q |
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| T |
11448224 |
ggataatacttgggtgacattgtggttggtgatattgg |
11448187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 36273121 - 36273074
Alignment:
| Q |
203 |
tttatggataatacttgggtgacattgtggtcggtaatattggccaac |
250 |
Q |
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| T |
36273121 |
tttacggataacacttgggtgacattgtggtcggtgatattgaccaac |
36273074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 34026752 - 34026785
Alignment:
| Q |
208 |
ggataatacttgggtgacattgtggtcggtaata |
241 |
Q |
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| T |
34026752 |
ggataatacttgggtgacattgtggttggtaata |
34026785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 29407496 - 29407536
Alignment:
| Q |
212 |
aatacttgggtgacattgtggtcggtaatattggccaacta |
252 |
Q |
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| T |
29407496 |
aatacttgggtgatattgtcgtcggtgatattggccaacta |
29407536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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