View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4297_low_7 (Length: 422)
Name: NF4297_low_7
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 30719740 - 30720146
Alignment:
| Q |
17 |
cagggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagt |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||| |
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| T |
30719740 |
cagggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagt |
30719839 |
T |
|
| Q |
117 |
gttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30719840 |
gttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttct |
30719939 |
T |
|
| Q |
217 |
tgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa-------- |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719940 |
tgttccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaa |
30720039 |
T |
|
| Q |
309 |
-----------cagagttcaatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgacc |
397 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30720040 |
ttaaaattaactagagtttaatgacaattcaatatttgatca----catagtttgtaattgaatgcattacataatagatagacacttaccacattgacc |
30720135 |
T |
|
| Q |
398 |
ttggttcttca |
408 |
Q |
| |
|
||||||||||| |
|
|
| T |
30720136 |
ttggttcttca |
30720146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 30881619 - 30881213
Alignment:
| Q |
17 |
cagggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagt |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||| |
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|
| T |
30881619 |
cagggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagt |
30881520 |
T |
|
| Q |
117 |
gttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30881519 |
gttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttct |
30881420 |
T |
|
| Q |
217 |
tgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa-------- |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30881419 |
tgttccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaa |
30881320 |
T |
|
| Q |
309 |
-----------cagagttcaatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgacc |
397 |
Q |
| |
|
||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30881319 |
ttaaaattaactagaatttaatgacaattcaatatttgatca----catagtttgtaattgaatgcattacataatagatagacacttaccacattgacc |
30881224 |
T |
|
| Q |
398 |
ttggttcttca |
408 |
Q |
| |
|
||||||||||| |
|
|
| T |
30881223 |
ttggttcttca |
30881213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 66 - 408
Target Start/End: Complemental strand, 30892653 - 30892296
Alignment:
| Q |
66 |
atttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataaga |
165 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30892653 |
atttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtggagtccatgattttgaatgatgaatttgaaagcatcatccataaga |
30892554 |
T |
|
| Q |
166 |
ccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattcctt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30892553 |
ccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatggattcctt |
30892454 |
T |
|
| Q |
266 |
cggttgccgcaacagcagaaaatgcccaacaacatcctacaaa-------------------cagagttcaatgacaattcaatatttgatcacatgcat |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |
|
|
| T |
30892453 |
cggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagagtttaatgacaattcaatatttgatca----cat |
30892358 |
T |
|
| Q |
347 |
agtatgtaattgaatgcattacatgttagatagacacttaccacattgaccttggttcttca |
408 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30892357 |
agtttgtaattgaatgcattacataatagatagacacttaccacattgaccttggttcttca |
30892296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 44731176 - 44731464
Alignment:
| Q |
17 |
cagggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||| |||| ||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
44731176 |
cagggacatcttcatacccggtaatggtagctgcatgaatggacgctttgtttgcattgcatgttccgtcaacaccttgataagggtatgcggcttcagt |
44731275 |
T |
|
| Q |
117 |
gttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttct |
216 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44731276 |
actaagtccgtgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacaccttttgtgtcacaatcaacaagttct |
44731375 |
T |
|
| Q |
217 |
tgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctac |
305 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
44731376 |
tgttccgataaagagaccaactttccagtactcaacttagtaattccttcggttgctgcaacagctgaaaatgcccaacaacatcctac |
44731464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 16867565 - 16867854
Alignment:
| Q |
19 |
gggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgt |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| |||| ||||| |||| || || ||||||||||||||||| || | ||||| || | |
|
|
| T |
16867565 |
gggacatcttcatacccagtaatggtaactgcattgatggatcctttgtttgcgttgcatgtcccgtcaacaccttgataagggtagttggcttcggtat |
16867664 |
T |
|
| Q |
119 |
tgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttg |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||| |
|
|
| T |
16867665 |
ttagtccatgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacacctttcgtgtcacagtcaacgagttcttg |
16867764 |
T |
|
| Q |
219 |
ttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
308 |
Q |
| |
|
||| |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
16867765 |
ttctgataaagagatcaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
16867854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 44731545 - 44731581
Alignment:
| Q |
372 |
ttagatagacacttaccacattgaccttggttcttca |
408 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |
|
|
| T |
44731545 |
ttagattgatacttaccacattgaccttggttcttca |
44731581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 8899234 - 8898943
Alignment:
| Q |
17 |
cagggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagt |
116 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||| || |||||||||||||||||| | || |||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
8899234 |
caggaacatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagt |
8899135 |
T |
|
| Q |
117 |
gttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899134 |
gttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttct |
8899035 |
T |
|
| Q |
217 |
tgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
308 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
8899034 |
tgttctgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
8898943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 74 - 308
Target Start/End: Complemental strand, 31727335 - 31727101
Alignment:
| Q |
74 |
tgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctc |
173 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||| | ||||||| |||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31727335 |
tgcatgttccatcaacaccttgataagggtattcagcttcagtgctaagtccattattttggatgatgaattcaaaagcatcatccataagaccaccctc |
31727236 |
T |
|
| Q |
174 |
acaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgcc |
273 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| || || || |||||||||||||||||||||||| |
|
|
| T |
31727235 |
acaaccttggtcttcaccatttgtgtcacaatcaacaagttcttgttctgataaagagaccaaatttcctgtggtcaacttatgaattccttcggttgat |
31727136 |
T |
|
| Q |
274 |
gcaacagcagaaaatgcccaacaacatcctacaaa |
308 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |
|
|
| T |
31727135 |
gcaaccgcagaaaacgcccaacaacatcctacaaa |
31727101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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