View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4297_low_8 (Length: 420)
Name: NF4297_low_8
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 413
Target Start/End: Original strand, 13820591 - 13820991
Alignment:
| Q |
12 |
aacaataactttttggttataacctcgtttagggttatagttattagggttaaacaattttccgtcatcaaattttatcgttggtgttaaacattgcaca |
111 |
Q |
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| T |
13820591 |
aacaataactttttggttataacctcatctagggttatagttattagggttaaacaattttccgtcatcaaattttattgtcggtgttaaacattgcaca |
13820690 |
T |
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| Q |
112 |
tctcgtattgaataaagggattaacactgaaaataaaatatttatagcgataaaaaacatattcgtaacatcttattaaaggttgtgtcaatgtataaag |
211 |
Q |
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| T |
13820691 |
tctcgtattgaataaagggattaacactgaaaataaaatatttatagcgataaaa-acatattcgtaacatcttattaaaggttgtgtcaatgtataaag |
13820789 |
T |
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| Q |
212 |
tttacttttactaggaaaagtctaataagtttactaacctattgatttattcatgttagatgattagaaaaccaccagtatatgggttactaatcctggg |
311 |
Q |
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| T |
13820790 |
tttacttttactaggaaaagtctaataagtttactaacctattgatttattcatgttagatgattagaaaaccaccagtatatgggttactaatcctggg |
13820889 |
T |
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| Q |
312 |
accatcacagcatttgtggttcaattttctgtccaatattttacctacgagaggtttggtatcaactttgatgaaaacttacctcaattatgttttcttc |
411 |
Q |
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| T |
13820890 |
accatcacagcatttgtggttcaattttctgtccaatattttacctacgagaggtttggtatcaactttgatgaaaacttacctcaattatgttttcttc |
13820989 |
T |
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| Q |
412 |
tc |
413 |
Q |
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| T |
13820990 |
tc |
13820991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 13817405 - 13817438
Alignment:
| Q |
244 |
actaacctattgatttattcatgttagatgatta |
277 |
Q |
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| T |
13817405 |
actaacctattgatttgttcatgttagatgatta |
13817438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 13817490 - 13817558
Alignment:
| Q |
290 |
tatatgggttactaatcctgggaccatcacagcatttgtggttcaattttctgtccaatattttaccta |
358 |
Q |
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| T |
13817490 |
tatatgggctgctaatcttgggaccatcacagcataagtattttaattttctatccaaaattttaccta |
13817558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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