View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4297_low_9 (Length: 393)
Name: NF4297_low_9
Description: NF4297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4297_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 42789439 - 42789063
Alignment:
| Q |
1 |
ttaggtataacagttaaacgttcagttctagaagaaattcttgactttgtgacaaaacagaacatccaccttatctcagacgaaatctactcaggatcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42789439 |
ttaggtataacagttaaacgttcagttctagaagagattcttgactttgtgacaaaaaagaacatccaccttatctcagacgaaatctactcaggatcag |
42789340 |
T |
|
| Q |
101 |
tgtttaattcctctgagtttgtaagcatagcagagattctcgaaactcgtcgatacaaagatgcagagagagttcacattgtttatagtctctcaaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42789339 |
tgtttaattcctctgagtttgtaagcatagcagagattcttgaaactcgtcgatacaaagatgcagagagagttcacattgtctatagtctctcaaaaga |
42789240 |
T |
|
| Q |
201 |
tctcggtctaccaggtttcagagttggaacaatttattcatacaatgataaggttgtaacaacagcccgaagaatgtcgagttttaccttgatatcttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42789239 |
tctcggtctaccaggtttcagagttggaacaatttattcatacaatgataaggttgtaacaacagcccgaagaatgtcgagttttaccttgatatcttca |
42789140 |
T |
|
| Q |
301 |
caaacacagcaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaag |
377 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42789139 |
caaacacaacaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaag |
42789063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 42798977 - 42798601
Alignment:
| Q |
1 |
ttaggtataacagttaaacgttcagttctagaagaaattcttgactttgtgacaaaacagaacatccaccttatctcagacgaaatctactcaggatcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798977 |
ttaggtataacagttaaacgttcagttctagaagagattcttgactttgtgacaaaaaagaacatccaccttatctcagacgaaatctactcaggatcag |
42798878 |
T |
|
| Q |
101 |
tgtttaattcctctgagtttgtaagcatagcagagattctcgaaactcgtcgatacaaagatgcagagagagttcacattgtttatagtctctcaaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42798877 |
tgtttaattcctctgagtttgtaagcatagcagagattcttgaaactcgtcgatacaaagatgcagagagagttcacattgtctatagtctctcaaaaga |
42798778 |
T |
|
| Q |
201 |
tctcggtctaccaggtttcagagttggaacaatttattcatacaatgataaggttgtaacaacagcccgaagaatgtcgagttttaccttgatatcttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798777 |
tctcggtctaccaggtttcagagttggaacaatttattcatacaatgataaggttgtaacaacagcccgaagaatgtcgagttttaccttgatatcttca |
42798678 |
T |
|
| Q |
301 |
caaacacagcaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaag |
377 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798677 |
caaacacaacaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaag |
42798601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 59 - 308
Target Start/End: Complemental strand, 34567054 - 34566805
Alignment:
| Q |
59 |
agaacatccaccttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattctcgaaactcgtcgatacaa |
158 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| || ||||| || ||| ||| || |||||||||| |||||||| ||| |||||| |||||| |
|
|
| T |
34567054 |
agaacatacaccttgtctcagacgaaatctactcgggctcagttttctcttcacatgaattcataagcatagccgagattcttgaatctcgtcaatacaa |
34566955 |
T |
|
| Q |
159 |
agatgcagagagagttcacattgtttatagtctctcaaaagatctcggtctaccaggtttcagagttggaacaatttattcatacaatgataaggttgta |
258 |
Q |
| |
|
||| || || ||| |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
34566954 |
agacgcggaaagatgtcacattgtttatagtctttctaaagatctcggtctaccaggtttcagagtcggaacaatttattcctacaacgataaagttgtt |
34566855 |
T |
|
| Q |
259 |
acaacagcccgaagaatgtcgagttttaccttgatatcttcacaaacaca |
308 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34566854 |
acaacagcacgaagaatgtcgagttttaccttaatatcttcacaaacaca |
34566805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University