View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4298_high_11 (Length: 438)
Name: NF4298_high_11
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 33989988 - 33990383
Alignment:
| Q |
19 |
atgacagcaaagaaaaggacagttgcattacataattattataacctgacagaaacagaaacagaaactgaaacagtatgcacgagaagagaaacagtag |
118 |
Q |
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| T |
33989988 |
atgacagcaaagaaaaggacagttgcattacataattattataacctgacagaaacagaaa------------cagtatgcacgagaagagaaacagtag |
33990075 |
T |
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| Q |
119 |
catctcaagagggtccaaacaaccataataaaaaggtggtgagtgagtgactgaaaatatacagcaaaaactaatatggcgcagttgaatgcaattctta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990076 |
catctcaagagggtccaaacaaccataataaaaaggtggtgagtgagtgactgaaaatatacagcaaaaactaatatggcgcagttgaatgcaattctta |
33990175 |
T |
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| Q |
219 |
catactcatccccagctattgctcctaccaaacatgcaaaaggtattatatatacttcacattttcctagctctatctatgatcnnnnnnngtgtgcaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33990176 |
catactcatccccagctattgctcctaccaaacatgcaaaaggtattatatatacttcacattttcctagctctatctatgatctttttttgtgtgcaaa |
33990275 |
T |
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| Q |
319 |
tatttcatcttgcagattatataaaaacagttgacatttttgagaactgtggttgaaccaattttggtatctgcaccctcctaactgttgtttactgtgt |
418 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33990276 |
tatttcatcttgcagattatacaaaaacagttgacatttttgagaactgtggttgaaccaattttggtatctgcaccctcctaactgttgtttactatgt |
33990375 |
T |
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