View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4298_high_15 (Length: 296)
Name: NF4298_high_15
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 4643289 - 4643023
Alignment:
| Q |
13 |
aatatgtactatgtgacaagtaaatgttcaaaatgtgaaacttaatatgaggataagagaatactgaaataactactactcaactttcaaacactgaatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4643289 |
aatatgtactatgtgacaagtaaatgttcaaaatgtgaaacttaatatgaggataagagaatactgaaataactactactcaactttcaaacactgaatt |
4643190 |
T |
|
| Q |
113 |
aaactcttaccctaattgatgaagtgattacagatactactcggggtacgtaagtaataagatctccaaatacacttgtttgaaacaaaggaaaaccata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4643189 |
aaactcttaccctaattgatgaagtgattacagatactactcggggtacgtaagtaataagatctccaaatacacttgtttgaaacaaaggaaaaccata |
4643090 |
T |
|
| Q |
213 |
gtcattgcctcctatctctcccacaataaacaaggagctgtgaagaacacctttgcagcctaaagag |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4643089 |
gtcattgcctcctatctctcccacaataaacaaggagctgtgaagaacacctttgcagcctaaagag |
4643023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University