View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4298_high_16 (Length: 279)
Name: NF4298_high_16
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 5682676 - 5682792
Alignment:
| Q |
148 |
gtgataccatagtctatatagatatgattgaattgaatgaaaagaaaagaaaatattgtccaattattgaacttttattctgaaaacggtcaacgcatgc |
247 |
Q |
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| T |
5682676 |
gtgataccatagtctatatagatatgattgaattgaatgaaaagaaaagaaaatattgtccaattattgaacttttattctgaaaacggtcaacgcatgc |
5682775 |
T |
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| Q |
248 |
caaaacatccaaaacat |
264 |
Q |
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| T |
5682776 |
caaaacatccaaaacat |
5682792 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 5682552 - 5682612
Alignment:
| Q |
19 |
cctaccctctattccacaccacagtgtcttttatctccttttgctattcaaaacacaagactat |
82 |
Q |
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| T |
5682552 |
cctaccctctattccacacca--gtgt-ttttatctccttttgctattcaaaacacaagactat |
5682612 |
T |
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