View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4298_high_22 (Length: 204)
Name: NF4298_high_22
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_high_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 4328418 - 4328296
Alignment:
| Q |
23 |
catgaagttcctcttccataacttaacctttatctactcatgatgtataaacacatattaatacaaacataagaaaagaatcaccggtggatgcttcctt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4328418 |
catgaagttcctcttccataacttaacctttatctactcatgatgtataaacatatattaatacaaacataagaaaagaatcactagtggatgcttcctt |
4328319 |
T |
|
| Q |
123 |
tcctccagaagtgcttcgatcac |
145 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
4328318 |
tgctccagaagtgcttcgatcac |
4328296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 30041255 - 30041285
Alignment:
| Q |
85 |
acaaacataagaaaagaatcaccggtggatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30041255 |
acaaacataagaaaagaatcaccggtggatg |
30041285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 30041209 - 30041245
Alignment:
| Q |
51 |
tttatctactcatgatgtataaacacatattaataca |
87 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
30041209 |
tttagctactcatgttgtataaacacatattaataca |
30041245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 24131738 - 24131702
Alignment:
| Q |
51 |
tttatctactcatgatgtataaacacatattaataca |
87 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
24131738 |
tttacctactcatgatgtataaacacacattaataca |
24131702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University