View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4298_high_3 (Length: 637)
Name: NF4298_high_3
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Complemental strand, 45699133 - 45698549
Alignment:
| Q |
18 |
atttattagttttagtggagctatgttatttgaacaaccatttacgaaacaattgatacgacaacaaaaaatataaagagaaagtaaaaacacaatatga |
117 |
Q |
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| T |
45699133 |
atttattagttttagtggaggtatgttatttgaacaactatttacaaaacaattgatacggcaacaaaaaatataaagagaaagtaaaaacacaatatga |
45699034 |
T |
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| Q |
118 |
gtatgacaactttattgattcatcatagacaaagaatcttaagacgggtcatgaacatgaaataaatacattttaatcaataataactttgnnnnnnngt |
217 |
Q |
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| T |
45699033 |
gtatgacaactttattgattcatcaaagacaaagaaccttaagacgggtcatgaacatgaaataaatacattttaatcaataataactttgttttttt-t |
45698935 |
T |
|
| Q |
218 |
aatccaaacacccctcacaagctccaagttggagaatgtgtgaaaaacacatcgagcttggaaataaactattgaagttcacaagtgatactaatgtgag |
317 |
Q |
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| T |
45698934 |
aatccaaacacccctcacaagctccatgttggagaatgtgtgaaaaacacatcgagcttggaaataaactattgaagttcacaagtgatactaatgtaag |
45698835 |
T |
|
| Q |
318 |
gcacactattaccccgttaaggtgactcataaacaatagtttattccttgtatttgttactcaccaaacagtaaccaaatggtggtaacttaacannnnn |
417 |
Q |
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| T |
45698834 |
gcacactattaccacgttaaggtgactcataaacaatagtttattccttgtatttgttactcaccaaacagtaaccaaatggtggtaacctaacattttt |
45698735 |
T |
|
| Q |
418 |
nnacccttcttcccaacaaaaaatctataccgttaaaactgaatgacaactccttcaaaatctaactatgaacaaattaaagacgacatattattattat |
517 |
Q |
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| T |
45698734 |
ttacccttcttcccaacaaaaaatctatgccgttaaaactgaatgacaactccttcaaaatctaac--tgaacaaattaaagacgacatattattattat |
45698637 |
T |
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| Q |
518 |
aagaaaacattcctggtaatatccataaatgactttgnnnnnnnggtaaaatgtgcctaatccaaatccaatttccacctatatgtttagggggacttt |
616 |
Q |
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| T |
45698636 |
aagaaaacattcctgg-----ttcatttatgttttt------ttggtaaaatgtgcctaatccaaatccaatttccacctatatgtttacgaggacttt |
45698549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 123
Target Start/End: Original strand, 13961376 - 13961405
Alignment:
| Q |
94 |
agagaaagtaaaaacacaatatgagtatga |
123 |
Q |
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| T |
13961376 |
agagaaagtaaaaacacaatatgagtatga |
13961405 |
T |
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