View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4298_high_7 (Length: 560)
Name: NF4298_high_7
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Original strand, 25951172 - 25951705
Alignment:
| Q |
7 |
gcagcacagacacttcagattgaggggcaacacatgttgatatataattttatgtagtcaccaaagttccgcattcacatagtcagtgaccgttggatcg |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25951172 |
gcagcactgacacttcagattgaggggcaacacatgttgatatataattttatgtagtcaccaaagttccgcattcacatagttagtgaccgttggatcg |
25951271 |
T |
|
| Q |
107 |
agatcaaacaatgcaaatttcaagatgagtatctacttgaaatctgccgtgtttgatcttgagttattagttgtatcggtgtgtggtgtccgtgtaagtg |
206 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25951272 |
agatcagacaatgcagatttcaagatgagtatctacttgaaatctgcagtgtttgatcttgagttattagtggtatcggtgtgtggtgtccgtgtaagtg |
25951371 |
T |
|
| Q |
207 |
acactactttaactaccattacnnnnnnnnnnnnnnnnnnntggtgattacaaaggatagatatacctagaattgaaaacaaagccagcaagaccaccta |
306 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25951372 |
acactacttcaactaccattacaaaataaaataaaaaaaa-tggtgattacaaaatatagatatacctagaattgaaaacaaagccagcaagaccaccta |
25951470 |
T |
|
| Q |
307 |
ttttaagcatagaatctctccacttcaaaattttatctttttcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgttt |
406 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25951471 |
ttttaagcatagagtctctccacttcaaaattttatctttttcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgttt |
25951570 |
T |
|
| Q |
407 |
tctgacatgagatggatcaaccttatagaaaacaggaataataagcctttgaagatcacaaatcctgttgagttcatcaagacaccaatgagaatcagca |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25951571 |
cctgacatgagatggatcaaccttatagaaaacaggaataataagcctttcaagatcacaaatcctgttgagttcatcaagacaccaatgagaatcagca |
25951670 |
T |
|
| Q |
507 |
tagttaggtgaaatgataacaatggaagcagcaga |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
25951671 |
tagttaggtgaaatgataacaatggaagcagcaga |
25951705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Original strand, 25960422 - 25960956
Alignment:
| Q |
7 |
gcagcacagacacttc-agattgaggggcaacacatgttgatatataattttatgtagtcaccaaagttccgcattcacatagtcagtgaccgttggatc |
105 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25960422 |
gcagcaccgacactttgagattgaggggcaacacatgttgatatataattctatgtagtcaccaaagttccgcattcacatagttagtgaccgttggatc |
25960521 |
T |
|
| Q |
106 |
gagatcaaacaatgcaaatttcaagatgagtatctacttgaaatctgccgtgtttgatcttgagttattagttgtatcggtgtgtggtgtccgtgtaagt |
205 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25960522 |
gagatcagacaatgcagatttcaagatgagtatctacttgaaatctgcagtgtttgatcttgagttattagtggtatcggtgtgtggtgtccgtgtaagt |
25960621 |
T |
|
| Q |
206 |
gacactactttaactaccattacnnnnnnnnnnnnnnnnnnntggtgattacaaaggatagatatacctagaattgaaaacaaagccagcaagaccacct |
305 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25960622 |
gacactacttcaactaccattacaaaataaaataaaaaaaa-tggtgattacaaaatatagatatacctagaattgaaaacaaagccagcaagaccacct |
25960720 |
T |
|
| Q |
306 |
attttaagcatagaatctctccacttcaaaattttatctttttcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgtt |
405 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25960721 |
attttaagcatagagtctctccacttcaaaattttatctttttcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgtt |
25960820 |
T |
|
| Q |
406 |
ttctgacatgagatggatcaaccttatagaaaacaggaataataagcctttgaagatcacaaatcctgttgagttcatcaagacaccaatgagaatcagc |
505 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25960821 |
tcctgacatgagatggatcaaccttatagaaaacaggaataataagcctttcaagatcacaaatcctgttgagttcatcaagacaccaatgagaatcagc |
25960920 |
T |
|
| Q |
506 |
atagttaggtgaaatgataacaatggaagcagcaga |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25960921 |
atagttaggtgaaatgataacaatggaagcagcaga |
25960956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University