View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4298_low_1 (Length: 697)
Name: NF4298_low_1
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 10 - 681
Target Start/End: Original strand, 863505 - 864183
Alignment:
| Q |
10 |
agagaggctaactttgcataaggttgatcttcttgatcttcaatctatccaatctgttgtccatggttgccatggtgtgttccacacagcctcccccgtc |
109 |
Q |
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| T |
863505 |
agagaggttaactttgcataaggttgatcttcttgatcttcaatctatccaatctgttgttcatggttgccatggtgtgttccacacagcctctcctgtc |
863604 |
T |
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| Q |
110 |
accgacaaccctgtgagttattttcattgttttccattcgaaaatataa---catttataaagagcaac--ttataaggtaaattaatcattttatggaa |
204 |
Q |
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| T |
863605 |
actgacaaccctgtaaggaattttctttgttttccatttgtaaatttaatttcacatagaaaatgtaacagttataaggtgaattaatcattttatggaa |
863704 |
T |
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| Q |
205 |
catataataggatgagatgttggagccagcagtgaatggaacaaagaatgtgattatagcgtctgcggaagcaaaagtgcgacgtgttgtgttcacttca |
304 |
Q |
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| T |
863705 |
catataataggatgagatgttagagccagcagtgaatggaactaagaatgtgattatagcgtccgcggaagctaaagtgcgacgtgttgttttcacttca |
863804 |
T |
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| Q |
305 |
tcgattggaacggtctatatggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggttt |
404 |
Q |
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| T |
863805 |
tcgattggaacggtctatatggacccaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggttt |
863904 |
T |
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| Q |
405 |
gattaattcactatgttcgtcttgtgcagagatctggttattaattaattaggtgatgaataatttaaattattttt--tgtgtgcagaactggtattgt |
502 |
Q |
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| T |
863905 |
gattaattcactctgttcgtcttgtgcagagatctggttattaattaattaggtgatgaataatttaactttttttttgtgtgtgcagaactggtattgt |
864004 |
T |
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| Q |
503 |
tatgggaagacagtggctgaacaatcagcatgggatatagcaaaagaaaatcaagttgatttggttgtggtgaacccagttgtggttcttggaccattgc |
602 |
Q |
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| T |
864005 |
tatgggaagacagtggctgaacaatcagcatgggatatagcaaaagaaaatcaagttgatttggttgtggtgaacccagttgtagttcttggaccattgt |
864104 |
T |
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| Q |
603 |
tacaaccaacaattaatgctagtacaattcacatactcaagtaccttaatggtgctgccaaaacttatgtgaatgcaac |
681 |
Q |
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| T |
864105 |
tacaaccaacaattaatgctagtacaattcacatactcaagtaccttaatggtgctgcaaaaacttatgtgaatgcaac |
864183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 318 - 409
Target Start/End: Original strand, 854092 - 854182
Alignment:
| Q |
318 |
tctatatggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggtttgatta |
409 |
Q |
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| T |
854092 |
tctatttggacccaaatacaagtagggttgttgtggtt-atgattcatattggagtgatttagaatattgcaagaacaccaaggtttgatta |
854182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 853981 - 854049
Alignment:
| Q |
59 |
caatctgttgtccatggttgccatggtgtgttccacacagcctcccccgtcaccgacaaccctgtgagt |
127 |
Q |
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| T |
853981 |
caatctgtagttcatgcttgtcatggtgtactccacacagcctatcctgtcaccgacaaccctgtgagt |
854049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 489 - 648
Target Start/End: Original strand, 45243172 - 45243331
Alignment:
| Q |
489 |
agaactggtattgttatgggaagacagtggctgaacaatcagcatgggatatagcaaaagaaaatcaagttgatttggttgtggtgaacccagttgtggt |
588 |
Q |
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| T |
45243172 |
agaattggtattgctatgggaaagcagtggcagaagcagcagcatgggatgtagcaaaagagaaaggtgtggatttggttgtagtgaatccagttttggt |
45243271 |
T |
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| Q |
589 |
tcttggaccattgctacaaccaacaattaatgctagtacaattcacatactcaagtacct |
648 |
Q |
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| T |
45243272 |
tcttggaccattgctacaacctacaatcaatgcaagcacaattcacatactaaaatacct |
45243331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 225 - 402
Target Start/End: Original strand, 45242914 - 45243091
Alignment:
| Q |
225 |
tggagccagcagtgaatggaacaaagaatgtgattatagcgtctgcggaagcaaaagtgcgacgtgttgtgttcacttcatcgattggaacggtctatat |
324 |
Q |
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| T |
45242914 |
tggagccagcagtgaatggagcaaagaatgtgatcatagctggtgcagaagcaaaagtgaggcgcgtggttttcacatcatcaattggtgcagtctatat |
45243013 |
T |
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| Q |
325 |
ggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggt |
402 |
Q |
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| T |
45243014 |
ggaccccaataggagtgttgatgtagaggttgatgagtcttgctggagtgatttggagttttgcaagaaaaccaaggt |
45243091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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