View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4298_low_10 (Length: 488)
Name: NF4298_low_10
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 35 - 488
Target Start/End: Complemental strand, 1231764 - 1231311
Alignment:
| Q |
35 |
acatacccacaatcctgcacccctatactcatacacagtttaagaaactcagaacctcaaagaagtgaagttttcataatcactcttcaataagcatcca |
134 |
Q |
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| T |
1231764 |
acatacccacaatcctgcacccctatactcatacacaatttaagaaactaagaacctcaaagaagtgaagttttcataatcactcttcaataagcatcca |
1231665 |
T |
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| Q |
135 |
ttgtgggttgtactaatattgtttttgacctcctacttttcatcctacatcaaacaagagaagagaacaattttatttttctttcctttcgatatcttat |
234 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1231664 |
ttgtgggttgtactaatgttgtttttgacctcctacttttcatcctacatcaaacaagagaagagaacaattttatttttctttcctttcgatatcttat |
1231565 |
T |
|
| Q |
235 |
tgataccaaaccaactaataaatcaattaaatttctagtctttttctttccattcaatttgttttctgcttgctttctttcctgctactatcttccttgt |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1231564 |
tgataccaaaccaactaataaatcaattaaatttctagtctttttctttccattcaatttgttttctgcttgctttctttcctactactatcttccttgt |
1231465 |
T |
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| Q |
335 |
attttctttgcactttcctttattttcaagaagaaaaactaacatataaaaacgaagccctttcaaaaagttaattagagaaaggaaaatggaaactgtg |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
1231464 |
attttctttgcactttcctttattttcaagaagaaaaacaaacatataaaaacaaagccatttcaaaaagttaattagtgaaaggaaaatggaaactgtg |
1231365 |
T |
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| Q |
435 |
tactatatggaaaggaaaatactgccgccgaggtttggtgaaaaaagtaccaaa |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1231364 |
tactatatggaaaggaaaatactgccgccgaggtttggtgaaaaaagtaccaaa |
1231311 |
T |
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