View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4298_low_13 (Length: 436)
Name: NF4298_low_13
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 38224808 - 38225119
Alignment:
| Q |
17 |
agaatgctccttcccatgcccatttgttttgttagacactaagttaactaactatttatcattnnnnnnnttattattctcttataaaagtataagtaaa |
116 |
Q |
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| T |
38224808 |
agaatgctccttcccgtgcccatttgttttgttagacactaagttaactaactatttatcattaaaaaaattattattctcttataaaagtataagtaaa |
38224907 |
T |
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| Q |
117 |
caatttatcattaatgatataagtatgcattatgggttacactcttggatgtgcaacaatatattttctgatacaatttaaagacagttttcaaaatttg |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38224908 |
caatttatcattaatgatataagtatgcattctgggttacactcttggatgtgcaacaatatattttctgatacaatttaaagacagttttcaaaatttg |
38225007 |
T |
|
| Q |
217 |
caacttggatatatcaaattataatgagagggtccaattttatatctctaactattaaatgttttctaaaacaaattttaggcacccgcaggatttgagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
38225008 |
caacttggatatatcaaattataatgagagggtccaattttatatctctaactattaaatgttttc---aacaaattttaggcacccacaggatttgagg |
38225104 |
T |
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| Q |
317 |
atctatgtctagttc |
331 |
Q |
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||||||||||||||| |
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| T |
38225105 |
atctatgtctagttc |
38225119 |
T |
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