View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4298_low_14 (Length: 435)
Name: NF4298_low_14
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 10944319 - 10944722
Alignment:
| Q |
20 |
aaatgcactctagattactccaattgctgcttgagtaatttcttcctgaaaaatcaaatgttaagaggtaaatgactgagatannnnnnngaagaaaaac |
119 |
Q |
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| T |
10944319 |
aaatgcactctagattactccaattgctgcttgagtaatttcttcctgaaaaatcaaatgttaagaggtaaatgactgagatatttttttgaagaaaaac |
10944418 |
T |
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| Q |
120 |
cattaacagttttctattgacgggcttctacgcgaaaaaattagagaaggtataaacaaatatgataaaatgtgaagaaccatcctcccttcatttagtt |
219 |
Q |
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| T |
10944419 |
cattaacagttttctattgacgggcttctacgcgaaaaaattagagaaggtataaacagatatgataaaatgtgaagaaccatcctcccttcatttagtt |
10944518 |
T |
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| Q |
220 |
gctgctctaaattttaagaatatctaaaaatttatattaatgggaaataagttatatgcctctgcaaaattaattcaaaaaatgtgactgtataagaaaa |
319 |
Q |
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| T |
10944519 |
gctgctctaaattttaagaatatctaaaaatttatattaatgggaaataagttatatgcctctgcaaaattaattcaaaaaatgtgactgtataagaaaa |
10944618 |
T |
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| Q |
320 |
ttccagaagatttttgttcttgttagttaagattttgttgagtatttaaaaatctatataaaggggaaagaagttaattatgatggtttcttcttcaata |
419 |
Q |
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| T |
10944619 |
ttccagaagatttttgttcttgttagttaagattttgttgagtatttaaaaatctacataaacgggaaagaag----ttatgatggtttcttcttcaaaa |
10944714 |
T |
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| Q |
420 |
cctatgct |
427 |
Q |
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| T |
10944715 |
cctatgct |
10944722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 10954214 - 10954316
Alignment:
| Q |
206 |
cccttcatttagttgctgctctaaattttaagaatatctaaaaatttatattaatgggaaataagttatatgcctctgcaaaattaattcaa-aaaatgt |
304 |
Q |
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| T |
10954214 |
cccttcatttagttgct-ctctaaattttaagcatatctaaatatctatattaacgggaaagaagatatatgcctctgcagaattaattcaataaaatgt |
10954312 |
T |
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| Q |
305 |
gact |
308 |
Q |
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|||| |
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| T |
10954313 |
gact |
10954316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 10954063 - 10954110
Alignment:
| Q |
22 |
atgcactctagattactccaattgctgcttgagtaatttcttcctgaa |
69 |
Q |
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| T |
10954063 |
atgcactgcagattactccagttgctgcttgagtaatttcttcctgaa |
10954110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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