View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4298_low_15 (Length: 381)

Name: NF4298_low_15
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4298_low_15
NF4298_low_15
[»] chr2 (15 HSPs)
chr2 (18-379)||(39215173-39215534)
chr2 (234-377)||(39414883-39415026)
chr2 (283-381)||(39459058-39459156)
chr2 (204-374)||(39473555-39473725)
chr2 (217-337)||(39421973-39422093)
chr2 (235-378)||(39137598-39137741)
chr2 (234-319)||(39415025-39415110)
chr2 (88-139)||(39369737-39369788)
chr2 (283-378)||(39369914-39370009)
chr2 (235-289)||(39487723-39487777)
chr2 (240-350)||(39381639-39381749)
chr2 (260-302)||(44614681-44614723)
chr2 (30-135)||(39161458-39161563)
chr2 (30-135)||(39207631-39207736)
chr2 (322-378)||(39152429-39152485)
[»] chr7 (1 HSPs)
chr7 (225-378)||(19807538-19807691)
[»] chr8 (1 HSPs)
chr8 (244-293)||(44951213-44951262)
[»] chr5 (1 HSPs)
chr5 (255-332)||(33560771-33560848)
[»] scaffold0250 (1 HSPs)
scaffold0250 (236-293)||(4265-4322)
[»] chr4 (1 HSPs)
chr4 (273-317)||(33151510-33151554)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 39215173 - 39215534
Alignment:
Q  18 aatggtaacatttcaaaagagaagcaatataaaaaacgggtgaaggagcttgagtcacgcgagaaacaccttgaaggacgagtaaaggatttggagtcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215173 aatggtaacatttcaaaagagaagcaatataaaaaacgggtgaaggagcttgagtcacgcgagaaacaccttgaaggacgagtaaaggatttggagtcaa 39215272  T
Q  118 gagagaaacagcttgaaggacaggagaaggaatttgaagaccaactgaagatgttgatgaatgaacttgtatctnnnnnnntgatgttcgagagacaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||    
T  39215273 gagagaaacagcttgaaggacaggagaaggaatttgaagaccaactgaagatgttgatgaatgaacttgtatctaaaaaaatgctgttcgagagacaatt 39215372  T
Q  218 gaagaatctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215373 gaagaatctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatca 39215472  T
Q  318 aatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaag 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215473 aatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaag 39215534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 234 - 377
Target Start/End: Complemental strand, 39415026 - 39414883
Alignment:
Q  234 aaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatcaaatgaggaggaattca 333  Q
    ||||||||| |||||  |||||||| |||||||||||| |||||| ||| |||||| |||||||||||| ||||| |||||||||| |||||||| ||||    
T  39415026 aaagaaaagaaattcagagaacaaatgaaggagttccactcaaaagagggggaattcaaaggtcaagtgaaggagtttgaatcaaaggaggaggagttca 39414927  T
Q  334 aaggccgggttaaggagctcagtttaaaaaagaagcaatttgaa 377  Q
    |||| |  |||||||| ||||  | |||| ||||||||||||||    
T  39414926 aaggtcaagttaaggaactcaaatcaaaagagaagcaatttgaa 39414883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 39459058 - 39459156
Alignment:
Q  283 aggaatttaaaggtcaagtggaggagcttgaatcaaatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagcc 381  Q
    |||| ||||||||||||| | ||||| ||||||||||| |||||||||||||||| | ||||||| |||||| || |||||||||||||||||||||||    
T  39459058 aggagtttaaaggtcaagggaaggagtttgaatcaaataaggaggaattcaaaggtcaggttaagcagctcaattcaaaaaagaagcaatttgaaagcc 39459156  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 204 - 374
Target Start/End: Complemental strand, 39473725 - 39473555
Alignment:
Q  204 ttcgagagacaattgaagaatctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtgg 303  Q
    |||||||| ||| ||||| | |||||| | ||||||||| ||||  | | ||||  ||||||||||||||||||| |||||||||||||  ||||||||     
T  39473725 ttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaatttaacagtcaagtga 39473626  T
Q  304 aggagcttgaatcaaatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaattt 374  Q
    ||||| || || | ||  |||||||||||||||| |||||||||||||| |  | ||||||||||||||||    
T  39473625 aggagtttaaaacgaagaaggaggaattcaaaggtcgggttaaggagcttaaataaaaaaagaagcaattt 39473555  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 39422093 - 39421973
Alignment:
Q  217 tgaagaatctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatc 316  Q
    ||||| |||||||| | | ||||||| ||||||| | ||||| ||||||||||| ||||||| ||||||||||||| ||| || || ||||| || ||||    
T  39422093 tgaaggatctcgaatcaatagaaaagaaattcgatggacaaatgaaggagttcctgtcaaaagaggaggaatttaacggtaaattgaaggagtttaaatc 39421994  T
Q  317 aaatgaggaggaattcaaagg 337  Q
    ||| |||||| ||||||||||    
T  39421993 aaaggaggagcaattcaaagg 39421973  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 378
Target Start/End: Original strand, 39137598 - 39137741
Alignment:
Q  235 aagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatcaaatgaggaggaattcaa 334  Q
    ||||||||||||  |||||||||| ||||||||||||||||||| | |||||||| ||||  || ||| ||||  |||||||||| || ||||| ||| |    
T  39137598 aagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaagtacacgtgaaggattttgaatcaaaggatgaggagttcga 39137697  T
Q  335 aggccgggttaaggagctcagtttaaaaaagaagcaatttgaaa 378  Q
    ||  |  |||||||||||||  | ||||||||||||||| ||||    
T  39137698 agatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaa 39137741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 39415110 - 39415025
Alignment:
Q  234 aaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatcaaa 319  Q
    |||||||| |||||| |||||| || ||| ||||||||||||||| |||||||| | ||||| |||||| ||||| ||||||||||    
T  39415110 aaagaaaatcaattcaaagaacgaatgaaagagttccagtcaaaagaggaggaactcaaaggacaagtgaaggagtttgaatcaaa 39415025  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 39369737 - 39369788
Alignment:
Q  88 ttgaaggacgagtaaaggatttggagtcaagagagaaacagcttgaaggaca 139  Q
    ||||||||||||||||||| ||||| ||||||||||| | ||||||||||||    
T  39369737 ttgaaggacgagtaaaggagttggaatcaagagagaagctgcttgaaggaca 39369788  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 39369914 - 39370009
Alignment:
Q  283 aggaatttaaaggtcaagtggaggagcttgaatcaaatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaa 378  Q
    |||| |||||||||| |||| ||| |||||||||||| |||||||||||  |||| || ||||||||| |||  | | ||| ||||||||||||||    
T  39369914 aggagtttaaaggtcgagtgaaggtgcttgaatcaaaggaggaggaatttgaaggtcgagttaaggagttcaagtcagaaaggaagcaatttgaaa 39370009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 39487777 - 39487723
Alignment:
Q  235 aagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatt 289  Q
    |||||||||||   |||||||||| ||||||||||||||||||| ||||||||||    
T  39487777 aagaaaagcaacatgaagaacaaatgaaggagttccagtcaaaagaggaggaatt 39487723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 350
Target Start/End: Complemental strand, 39381749 - 39381639
Alignment:
Q  240 aagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatcaaatgaggaggaattcaaaggcc 339  Q
    ||||||||||| | ||||| ||||||||| || | |||| ||||||||||| ||||  ||||| ||||  || |||||||  |||||||| ||||||| |    
T  39381749 aagcaattcgagggacaaatgaaggagtttcaattaaaagaggaggaatttgaaggcaaagtgaaggaaattaaatcaaagaaggaggaactcaaaggtc 39381650  T
Q  340 gggttaaggag 350  Q
      |||||||||    
T  39381649 aagttaaggag 39381639  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 44614681 - 44614723
Alignment:
Q  260 gaaggagttccagtcaaaacaggaggaatttaaaggtcaagtg 302  Q
    |||||||||||||||| || |||||||||||||||||| ||||    
T  44614681 gaaggagttccagtcagaagaggaggaatttaaaggtcgagtg 44614723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 39161458 - 39161563
Alignment:
Q  30 tcaaaagagaagcaatataaaaaacgggtgaaggagcttgagtcacgcgagaaacaccttgaaggacgagtaaaggatttggagtcaagagagaaacagc 129  Q
    |||||||||||||| ||| ||  ||| ||| |||||||| |||||   ||||| ||| |||| | ||| |||| |||  |||||||||||||||| ||||    
T  39161458 tcaaaagagaagcagtatgaaggacgagtggaggagcttcagtcaaaggagaagcactttgaggaacgggtaacggagctggagtcaagagagaagcagc 39161557  T
Q  130 ttgaag 135  Q
    ||||||    
T  39161558 ttgaag 39161563  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 39207736 - 39207631
Alignment:
Q  30 tcaaaagagaagcaatataaaaaacgggtgaaggagcttgagtcacgcgagaaacaccttgaaggacgagtaaaggatttggagtcaagagagaaacagc 129  Q
    |||||||||||||| ||| ||  ||| ||| |||||||| |||||   ||||| ||| |||| | ||| |||| |||  |||||||||||||||| ||||    
T  39207736 tcaaaagagaagcagtatgaaggacgagtggaggagcttcagtcaaaggagaagcactttgaggaacgggtaacggagctggagtcaagagagaagcagc 39207637  T
Q  130 ttgaag 135  Q
    ||||||    
T  39207636 ttgaag 39207631  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 39152429 - 39152485
Alignment:
Q  322 aggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaa 378  Q
    |||||||||||||||| | |||||||||||| |  | |||||||||| |||||||||    
T  39152429 aggaggaattcaaaggtcaggttaaggagcttaaatcaaaaaagaagaaatttgaaa 39152485  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 378
Target Start/End: Original strand, 19807538 - 19807691
Alignment:
Q  225 ctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatcaaatgagg 324  Q
    ||||||||  ||||||||||||  |||||||||| ||||||||||||||||||| | |||||||| ||||  || ||| ||||  |||||||||| || |    
T  19807538 ctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaagcacacgtgaaggattttgaatcaaaggatg 19807637  T
Q  325 aggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaa 378  Q
    |||  ||| |||| || ||||||||| |||  | ||||||||||||||| ||||    
T  19807638 aggggttcgaaggtcgagttaaggagttcaaataaaaaaagaagcaattcgaaa 19807691  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 44951262 - 44951213
Alignment:
Q  244 aattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaa 293  Q
    ||||| |||||||| |||||||||| ||||||||| ||||||||||||||    
T  44951262 aattcaaagaacaagagaaggagtttcagtcaaaagaggaggaatttaaa 44951213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 33560771 - 33560848
Alignment:
Q  255 caaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatcaaatgaggaggaattc 332  Q
    |||| ||||||| || |||||||| ||||| |||| ||||| |||||| ||||| || ||||||| ||||||||||||    
T  33560771 caaatgaaggagctcgagtcaaaagaggagaaattcaaaggacaagtgaaggagtttcaatcaaaagaggaggaattc 33560848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 4265 - 4322
Alignment:
Q  236 agaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaa 293  Q
    |||||||  |||| ||| |||| |||||||||| ||||||||| ||||||||||||||    
T  4265 agaaaagatattcaaaggacaagagaaggagtttcagtcaaaagaggaggaatttaaa 4322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 33151510 - 33151554
Alignment:
Q  273 tcaaaacaggaggaatttaaaggtcaagtggaggagcttgaatca 317  Q
    |||||| | ||||||||||||||||||||| |||| |||||||||    
T  33151510 tcaaaagaagaggaatttaaaggtcaagtgaaggatcttgaatca 33151554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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