View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4298_low_16 (Length: 341)

Name: NF4298_low_16
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4298_low_16
NF4298_low_16
[»] chr6 (3 HSPs)
chr6 (1-316)||(26615928-26616243)
chr6 (1-316)||(26721856-26722171)
chr6 (1-77)||(16856604-16856680)
[»] chr2 (2 HSPs)
chr2 (79-184)||(653442-653548)
chr2 (75-149)||(40072222-40072296)
[»] chr4 (3 HSPs)
chr4 (1-77)||(43942830-43942906)
chr4 (3-77)||(22073963-22074037)
chr4 (75-123)||(22073891-22073939)
[»] chr3 (1 HSPs)
chr3 (1-77)||(5885031-5885107)
[»] scaffold0182 (1 HSPs)
scaffold0182 (2-77)||(10778-10853)
[»] chr1 (1 HSPs)
chr1 (75-124)||(51167539-51167588)
[»] chr5 (1 HSPs)
chr5 (76-176)||(27280962-27281061)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 26615928 - 26616243
Alignment:
Q  1 tacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaatgtaggacaaatagtctcatcagt 100  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26615928 tacaaaattgaagatgatctaaccaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaatgtaggacaaatagtctcatcagt 26616027  T
Q  101 agaaattaaaaatatagagatcatatcagtggttgtatatataatgagtaaatgaatggtcatagttaagaaatatcagttatggaatnnnnnnnnnnnn 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  26616028 agaaattaaaaatatagagatcatattagtggttgtatatataatgagtaaatgaatggtcatagttaagaaatatcagttatggaataaaaaaataaaa 26616127  T
Q  201 nntaatagtattccacattcgtgttatcctatgtttaaattggtctttgttgtagcattaaattaaataaggtgaaggataatagnnnnnnnncggttac 300  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  26616128 aataatagtattccacattcgtgttatcctatgtttaaattggtctttgttgtagcattaaattaaataaggtgaaggataatagttttttttcggttac 26616227  T
Q  301 aaaaatgttgatagtc 316  Q
    ||||||||||||||||    
T  26616228 aaaaatgttgatagtc 26616243  T

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Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 26721856 - 26722171
Alignment:
Q  1 tacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaatgtaggacaaatagtctcatcagt 100  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26721856 tacaaaattgaagatgatctaaccaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaatgtaggacaaatagtctcatcagt 26721955  T
Q  101 agaaattaaaaatatagagatcatatcagtggttgtatatataatgagtaaatgaatggtcatagttaagaaatatcagttatggaatnnnnnnnnnnnn 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  26721956 agaaattaaaaatatagagatcatattagtggttgtatatataatgagtaaatgaatggtcatagttaagaaatatcagttatggaataaaaaaataaaa 26722055  T
Q  201 nntaatagtattccacattcgtgttatcctatgtttaaattggtctttgttgtagcattaaattaaataaggtgaaggataatagnnnnnnnncggttac 300  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  26722056 aataatagtattccacattcgtgttatcctatgtttaaattggtctttgttgtagcattaaattaaataaggtgaaggataatagttttttttcggttac 26722155  T
Q  301 aaaaatgttgatagtc 316  Q
    ||||||||||||||||    
T  26722156 aaaaatgttgatagtc 26722171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16856680 - 16856604
Alignment:
Q  1 tacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaat 77  Q
    ||||| ||||||||||| |||| ||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||    
T  16856680 tacaatattgaagatgaactaaccaattgttgcttgaatgcggtgatgaacaaaacccaaaatttggtgcccaaaat 16856604  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 653442 - 653548
Alignment:
Q  79 taggacaaatagtctcatcagtagaaattaaaaa-tatagagatcatatcagtggttgtatatataatgagtaaatgaatggtcatagttaagaaatatc 177  Q
    |||||||||||||||||||||||||||  ||||| ||| |||||||||| |||||| ||||||||||||||| | |||||| |  ||||||||||||||     
T  653442 taggacaaatagtctcatcagtagaaacaaaaaaatatggagatcatattagtggtagtatatataatgagtgagtgaatgtttctagttaagaaatatg 653541  T
Q  178 agttatg 184  Q
    |||||||    
T  653542 agttatg 653548  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 40072222 - 40072296
Alignment:
Q  75 aatgtaggacaaatagtctcatcagtagaaattaaaaatatagagatcatatcagtggttgtatatataatgagt 149  Q
    ||||||||||||||||||| || |||||||| |  |||||| || ||||||| ||||||| ||| ||||||||||    
T  40072222 aatgtaggacaaatagtctaattagtagaaactttaaatattgatatcatattagtggttctatgtataatgagt 40072296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43942906 - 43942830
Alignment:
Q  1 tacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaat 77  Q
    ||||| ||||||||||| |||| ||||||||  ||||||||||||| ||||||||||||||||||||||| ||||||    
T  43942906 tacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatttggtgcacaaaat 43942830  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 22074037 - 22073963
Alignment:
Q  3 caaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaat 77  Q
    |||||||||||||||  ||  ||||||||  ||||| ||||||| ||||||||||||||||||||||| ||||||    
T  22074037 caaaattgaagatgaattatacaattgttgtttgaaagtggtgatgaacaaaacccaaaatttggtgcgcaaaat 22073963  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 22073939 - 22073891
Alignment:
Q  75 aatgtaggacaaatagtctcatcagtagaaattaaaaatatagagatca 123  Q
    |||||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  22073939 aatgtaagacaaatagtcacatcaatagaaactaaaaatattgagatca 22073891  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5885031 - 5885107
Alignment:
Q  1 tacaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaat 77  Q
    ||||| ||||||||||| |||| ||||||||  ||||||||||||| ||||||||||||||||||||||| ||||||    
T  5885031 tacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatttggtgcacaaaat 5885107  T

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Target: scaffold0182 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 10778 - 10853
Alignment:
Q  2 acaaaattgaagatgacctaatcaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaat 77  Q
    |||| ||||||||||| |||| ||||||||  ||||||||||||| ||||||||||||||||||||||| ||||||    
T  10778 acaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatttggtgcacaaaat 10853  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 51167539 - 51167588
Alignment:
Q  75 aatgtaggacaaatagtctcatcagtagaaattaaaaatatagagatcat 124  Q
    |||||||||||||||||||| | |||||||| |||| |||| ||||||||    
T  51167539 aatgtaggacaaatagtctccttagtagaaactaaatatattgagatcat 51167588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 27280962 - 27281061
Alignment:
Q  76 atgtaggacaaatagtctcatcagtagaaattaaaaatatagagatcatatcagtggttgtatatataatgagtaaatgaatggtcatagttaagaaata 175  Q
    |||||||||||||| ||| || | ||||||  |||||||| |||  ||||| |||||||||||||||||| ||| | |||||  | ||| ||||||||||    
T  27280962 atgtaggacaaataatcttattattagaaaa-aaaaatattgagtacatattagtggttgtatatataataagtgagtgaataattatatttaagaaata 27281060  T

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