View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4298_low_17 (Length: 323)
Name: NF4298_low_17
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 33717854 - 33718137
Alignment:
| Q |
18 |
atgatgagctctgtgttt-atataacgatatattgacatatttctaataataaaaagttacaaaagtgattcttgtatcggataccgagtttttgaaagn |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
33717854 |
atgatgagctctgtgttttatataacgatgtattgacatatttttaataataaaaagttacaaaagtgattcttgtatcggataccgagtttataaaaaa |
33717953 |
T |
|
| Q |
117 |
nnnnnnnnnnnnnntttacaaaagttatttaactctagtaggtggaaaatgtatgatgatgattaaatcctttttcaaatttaaggatgtttccaaatct |
216 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33717954 |
aagaaaag-------ttacaaaagttatttaactctttttggtt---aatgtatgatgatgattaaatcctttttcaaatttaaggatgtttccaaatct |
33718043 |
T |
|
| Q |
217 |
tatcatttattactctagtttgtatcatcaacatgcttatattgatgaatgatagtttttatttttaacaaatgactatgcagtttgatgatgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33718044 |
tatcatttattactctagtttgtatcatcaacatgcttatattgatgaatgatagtttttatttttaacaaatgactatgcagtttgatgatgt |
33718137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University