View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4298_low_23 (Length: 220)
Name: NF4298_low_23
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_low_23 |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 16081106 - 16080898
Alignment:
| Q |
12 |
aacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatccattgcttctaaccaagtacgtagcaaccaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16081106 |
aacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatccattgcttctaaccaagtacgtagcaaccaa |
16081007 |
T |
|
| Q |
112 |
acaaaactctcttcagtttcatcccataacagagcacaaccaaaaagtatagactgttggtgatgattaactccagtgaacggaacaaagggcattaggt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
16081006 |
acaaaactctcttcagtttcatcccataacagagcacaaccaaaaagtatagactgttggtgatgattaactcccgtgaatggaacaaagggcattaggt |
16080907 |
T |
|
| Q |
212 |
acttatttg |
220 |
Q |
| |
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| ||||||| |
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| T |
16080906 |
atttatttg |
16080898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 51166739 - 51166531
Alignment:
| Q |
12 |
aacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatccattgcttctaaccaagtacgtagcaaccaa |
111 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51166739 |
aacctttgcaactgcattagaaatagaagtgtcttaatcagtgataatagttttaggactaactccatccattgcttctaaccaagtacgtagcaaccaa |
51166640 |
T |
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| Q |
112 |
acaaaactctcttcagtttcatcccataacagagcacaaccaaaaagtatagactgttggtgatgattaactccagtgaacggaacaaagggcattaggt |
211 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51166639 |
acaaaactctcttcagtttcatcccataacaaagcacaaccaaaaagtatagactgttggtgatgattaactccagtgaatggaacaaagggcattaggt |
51166540 |
T |
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| Q |
212 |
acttatttg |
220 |
Q |
| |
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| ||||||| |
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| T |
51166539 |
atttatttg |
51166531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 64743 - 64536
Alignment:
| Q |
12 |
aacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatccattgcttctaaccaagtacgtagcaaccaa |
111 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
64743 |
aacctttgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatccattgcttctaaccaagtacgtagcaaccaa |
64644 |
T |
|
| Q |
112 |
acaaaactctcttcagtttcatcccataacagagcacaaccaaaaagtatagactgttggtgatgattaactccagtgaacggaacaaagggcattaggt |
211 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| || |
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| T |
64643 |
acaaaactctcttcagtttcatcccataacagagcacaaccaaaaagtatagattgttggtgatgattaactccagtgaatgg-acaaagggcattatgt |
64545 |
T |
|
| Q |
212 |
acttatttg |
220 |
Q |
| |
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| ||||||| |
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| T |
64544 |
atttatttg |
64536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 22639288 - 22639225
Alignment:
| Q |
144 |
agcacaaccaaaaagtatagactgttggtgatgattaactccagtgaacggaacaaagggcatt |
207 |
Q |
| |
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||||||||||||||| || || ||||| |||||||||||||| ||||| ||||| || |||||| |
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| T |
22639288 |
agcacaaccaaaaagaattgattgttgatgatgattaactccggtgaatggaacgaaaggcatt |
22639225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 48773208 - 48773000
Alignment:
| Q |
12 |
aacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatccattgcttctaaccaagtacgtagcaaccaa |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
48773208 |
aacctgtgcagctgcattagaaatagaagtgtcttgatcagtgataatagttttaggaataactccatccatttcttctaaccaagtacgtagcaaccaa |
48773109 |
T |
|
| Q |
112 |
acaaaactctcttcagtttcatcccataacagagcacaaccaaaaagtatagactgttggtgatgattaactccagtgaacggaacaaagggcattaggt |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48773108 |
acaaaactctcttcaatttcatcccataacagagcacaaccaaaaagtatagaccgttggtgatgattaactccagtgaatggaacaaagggcattaggt |
48773009 |
T |
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| Q |
212 |
acttatttg |
220 |
Q |
| |
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| ||||||| |
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| T |
48773008 |
atttatttg |
48773000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 44885308 - 44885478
Alignment:
| Q |
18 |
tgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatccattgcttctaaccaagtacgtagcaaccaaacaaaa |
117 |
Q |
| |
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|||||||||||| | |||| ||||| ||| || ||||||| ||||||||| | ||| ||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
44885308 |
tgcaactgcattggtgatagcagtgtgttggtctgtgataacagttttagggcaaaccccactcattgcttctaaccaagtacttagcaaccaatcaaaa |
44885407 |
T |
|
| Q |
118 |
ctctcttcagtttcatcccataacagagcacaaccaaaaagtatagactgttggtgatgattaactccagt |
188 |
Q |
| |
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|||||| ||| ||||||||| || ||||||||||||||||| || || ||||| ||||||||||||||||| |
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| T |
44885408 |
ctctctacagcttcatcccacaagagagcacaaccaaaaagaattgattgttgatgatgattaactccagt |
44885478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 19329662 - 19329517
Alignment:
| Q |
55 |
ataatagttttaggactaactccatccattgcttctaaccaagtacgtagcaaccaaacaaaactctcttcagtttcatcccataacagagcacaaccaa |
154 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||| | |||||||| || |
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| T |
19329662 |
ataatagtattaggacgaactccatccattgctttcaaccaagtacgtagaaatcaaacaaaactctcttcagtttcgtcccataatacagcacaacaaa |
19329563 |
T |
|
| Q |
155 |
aaagtatagactgttggtgatgattaactccagtgaacggaacaaa |
200 |
Q |
| |
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||| ||||| ||||||||||||| ||||| ||||| |||||||| |
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| T |
19329562 |
aaataatagattgttggtgatgatcaactctggtgaatggaacaaa |
19329517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 35066875 - 35066775
Alignment:
| Q |
34 |
atagaagtgtcttgatcagtgataatagttttaggactaactccatcca-ttgcttctaaccaagtacgtagcaaccaaacaaaactctcttcagtttca |
132 |
Q |
| |
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|||| ||||||||||| |||| |||||||||||||| ||| || || |||||||||| ||||||| || |||||||||||| |||||||| ||||| |
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| T |
35066875 |
atagcagtgtcttgatttgtgacaatagttttaggacaaacccccgcctgttgcttctaatcaagtacttaacaaccaaacaaatatctcttcattttca |
35066776 |
T |
|
| Q |
133 |
t |
133 |
Q |
| |
|
| |
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|
| T |
35066775 |
t |
35066775 |
T |
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Back To:
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