View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4298_low_4 (Length: 616)

Name: NF4298_low_4
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4298_low_4
NF4298_low_4
[»] chr3 (4 HSPs)
chr3 (19-331)||(44694515-44694827)
chr3 (398-497)||(44694891-44694990)
chr3 (523-601)||(44694985-44695063)
chr3 (574-613)||(34021496-34021536)
[»] chr8 (4 HSPs)
chr8 (575-613)||(40670955-40670993)
chr8 (577-613)||(17492530-17492566)
chr8 (573-613)||(36064027-36064068)
chr8 (574-613)||(42443102-42443142)
[»] chr7 (3 HSPs)
chr7 (571-616)||(12102740-12102785)
chr7 (576-615)||(37149522-37149561)
chr7 (574-613)||(27164870-27164910)
[»] chr4 (2 HSPs)
chr4 (574-612)||(41347490-41347528)
chr4 (575-614)||(9162065-9162105)
[»] chr1 (4 HSPs)
chr1 (575-616)||(51703483-51703524)
chr1 (575-614)||(1690445-1690485)
chr1 (575-614)||(31493884-31493924)
chr1 (569-613)||(45333563-45333607)
[»] chr6 (1 HSPs)
chr6 (575-614)||(15722535-15722575)
[»] chr2 (2 HSPs)
chr2 (577-613)||(17826052-17826088)
chr2 (573-612)||(22353198-22353238)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 44694515 - 44694827
Alignment:
Q  19 aataaaccctaaaatatcctataaattaacctaccaatgcatggcaacagggatatcatgtcatactcatcattatgattattcacatggagcaataaag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44694515 aataaaccctaaaatatcctataaattaacctaccaatgcatggcaacagggatatcatgtcatactcatcattatgattattcacatggagtaataaag 44694614  T
Q  119 atgcatgacatatgtttacgagagcttgtcatttcagaaaatcaaatgcatgcataaacacttaatttaccgttaattaatgatctagactaagaaggaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44694615 atgcatgacatatgtttacgagagcttgtcatttcagaaaatcaaatgcatgcataaactcttaatttaccgttaattaatgatctagactaagaaggaa 44694714  T
Q  219 aaagagtaggttacctcagcttcgttggagagaccaagttttgtgaccagatactttttaaccatcaacaccgtcatgttttcatcccttttcaatcaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44694715 aaagagtaggttacctcagcttcgttggagagaccaagttttgtgaccagatactttttaaccatcaacaccgtcatgttttcatcccttttcaatcaca 44694814  T
Q  319 atttagagagaag 331  Q
    |||||||||||||    
T  44694815 atttagagagaag 44694827  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 398 - 497
Target Start/End: Original strand, 44694891 - 44694990
Alignment:
Q  398 gattgaagaggaaagtgatcaatataaacccgtaatacacccccaaccgctgcttggaagatagaaatagagagattgatgggatagatgtagtaataag 497  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||||    
T  44694891 gattgaagaggaaagtgatcaatataaacccataatacacccccaaccgctgcttggaagatagaaacagagagagtgatgagatagatgtaataataag 44694990  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 523 - 601
Target Start/End: Original strand, 44694985 - 44695063
Alignment:
Q  523 aataagataataataaatagtaaacatttaaatgttggagatgtttaaatatagagaaataatatttgtacaatcattt 601  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  44694985 aataagataataataaatagtaaatatttaagtgttggagatgtttaaatatagagaaatgatatttgtacaattattt 44695063  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 613
Target Start/End: Complemental strand, 34021536 - 34021496
Alignment:
Q  574 tagagaaataatatttgtacaatc-atttgtgacaactttt 613  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  34021536 tagagaaatgatatttgtacaatcaatttgtgacaactttt 34021496  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 575 - 613
Target Start/End: Original strand, 40670955 - 40670993
Alignment:
Q  575 agagaaataatatttgtacaatcatttgtgacaactttt 613  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  40670955 agagaaataatatttgtacaaccatttgtgacaactttt 40670993  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 613
Target Start/End: Original strand, 17492530 - 17492566
Alignment:
Q  577 agaaataatatttgtacaatcatttgtgacaactttt 613  Q
    |||||| ||||||||||||||||||||||||||||||    
T  17492530 agaaatgatatttgtacaatcatttgtgacaactttt 17492566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 613
Target Start/End: Original strand, 36064027 - 36064068
Alignment:
Q  573 atagagaaataatatttgtacaatca-tttgtgacaactttt 613  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  36064027 atagagaaatgatatttgtacaatcattttgtgacaactttt 36064068  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 613
Target Start/End: Original strand, 42443102 - 42443142
Alignment:
Q  574 tagagaaataatatttgtacaatcattt-gtgacaactttt 613  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  42443102 tagagaaatgatatttgtacaatcatttagtgacaactttt 42443142  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 571 - 616
Target Start/End: Complemental strand, 12102785 - 12102740
Alignment:
Q  571 atatagagaaataatatttgtacaatcatttgtgacaacttttttg 616  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||    
T  12102785 atatagagaaatgatatttgttcaatcatttgtgacaatttttttg 12102740  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 576 - 615
Target Start/End: Complemental strand, 37149561 - 37149522
Alignment:
Q  576 gagaaataatatttgtacaatcatttgtgacaactttttt 615  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  37149561 gagaaatgatatttgtacaaccatttgtgacaactttttt 37149522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 613
Target Start/End: Complemental strand, 27164910 - 27164870
Alignment:
Q  574 tagagaaataatatttgtacaatc-atttgtgacaactttt 613  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  27164910 tagagaaatgatatttgtacaatcaatttgtgacaactttt 27164870  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 41347528 - 41347490
Alignment:
Q  574 tagagaaataatatttgtacaatcatttgtgacaacttt 612  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  41347528 tagagaaattatatttgtacaatcatttttgacaacttt 41347490  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 614
Target Start/End: Original strand, 9162065 - 9162105
Alignment:
Q  575 agagaaataatatttgtacaatca-tttgtgacaacttttt 614  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  9162065 agagaaatgatatttgtacaatcattttgtgacaacttttt 9162105  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 616
Target Start/End: Complemental strand, 51703524 - 51703483
Alignment:
Q  575 agagaaataatatttgtacaatcatttgtgacaacttttttg 616  Q
    |||||||| |||||| ||||||||||||||| ||||||||||    
T  51703524 agagaaatgatatttatacaatcatttgtgataacttttttg 51703483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 614
Target Start/End: Original strand, 1690445 - 1690485
Alignment:
Q  575 agagaaataatatttgtacaatca-tttgtgacaacttttt 614  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  1690445 agagaaataatatttgtacaaccattttgtgacaacttttt 1690485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 614
Target Start/End: Original strand, 31493884 - 31493924
Alignment:
Q  575 agagaaataatatttgtacaatc-atttgtgacaacttttt 614  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  31493884 agagaaataatatttgtacgatcaatttgtgacaacttttt 31493924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 613
Target Start/End: Original strand, 45333563 - 45333607
Alignment:
Q  569 aaatatagagaaataatatttgtacaatcatttgtgacaactttt 613  Q
    |||||||||||||| ||||||| |||||||||| | |||||||||    
T  45333563 aaatatagagaaatgatatttgaacaatcattttttacaactttt 45333607  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 614
Target Start/End: Complemental strand, 15722575 - 15722535
Alignment:
Q  575 agagaaataatatttgtacaatca-tttgtgacaacttttt 614  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  15722575 agagaaatgatatttgtacaatcattttgtgacaacttttt 15722535  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 577 - 613
Target Start/End: Original strand, 17826052 - 17826088
Alignment:
Q  577 agaaataatatttgtacaatcatttgtgacaactttt 613  Q
    |||||| |||||||||||| |||||||||||||||||    
T  17826052 agaaatgatatttgtacaaccatttgtgacaactttt 17826088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 573 - 612
Target Start/End: Complemental strand, 22353238 - 22353198
Alignment:
Q  573 atagagaaataatatttgtacaatca-tttgtgacaacttt 612  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  22353238 atagagaaatgatatttgtacaatcattttgtgacaacttt 22353198  T

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