View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4298_low_8 (Length: 533)
Name: NF4298_low_8
Description: NF4298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4298_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 34479377 - 34479876
Alignment:
| Q |
1 |
ataaaacattaaacactaatgtcaattttgacaaggtgtattttaatttgatgtctttgtcnnnnnnnnnnnnnnnnnnnnnnnnncattttcattgtaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34479377 |
ataaaacattaaacactaatgtcaattttgacaaggtgtattttaatttgatgtctttgtcaaaggaaaagaaaaaagagaagaaacattttcattgtaa |
34479476 |
T |
|
| Q |
101 |
tcaaattgattaaaatattgctttcaagttttgttgtggacatgccagttaatttattcttctggatggtatgagatagtcagtcagtttcttgagctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
34479477 |
tcaaattgattaaaatattgctttcaagttttgttgtggacatgccagttaatttattcttctggatggtatgacacagtcagtcagtttcttgagctat |
34479576 |
T |
|
| Q |
201 |
tttagttgcaccgccatcttatctttatttgttgcctaacttatataatggtgatgtggggcaattattactattgtatttatgttttaagcatctcata |
300 |
Q |
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| T |
34479577 |
tttagttgcaccgccatcttatctttatttgttgcctaacttatataatggtgatgtggggcaattattactattgtatttatgttttaagcatctcata |
34479676 |
T |
|
| Q |
301 |
atcaaaactagttagaatattataattattctacatccacctt----gataaatcaactcagttgttggtttcttcatcagttattaaaatgattcaaga |
396 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34479677 |
atcaaaactagttagaatattataattattcttcatccaccttgatagataaatcaactcagttgttggtttcttcatcagttattaaaatgattcaaga |
34479776 |
T |
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| Q |
397 |
caatgttaccaaaggatcattcaacttgactaaattaagttcaaatatgtggttaatttttgaacatttgttgtattctactaaaaccaaaatttaataa |
496 |
Q |
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| T |
34479777 |
caatgttaccaaaggatcattcaacttgactaaattaagttcaaatatgtggttaatttttgaacatttgttgtattctactaaaaccaaaatttaataa |
34479876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 34489794 - 34489852
Alignment:
| Q |
89 |
ttttcattgtaatcaaattgattaaaatat--tgctttcaagttttgttgtggacatgc |
145 |
Q |
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||||||||| ||||| ||||||||| |||| |||||| |||||||||||||||||||| |
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| T |
34489794 |
ttttcattgcaatcagattgattaagatatattgctttaaagttttgttgtggacatgc |
34489852 |
T |
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