View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4299-Insertion-19 (Length: 128)

Name: NF4299-Insertion-19
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4299-Insertion-19
NF4299-Insertion-19
[»] chr3 (7 HSPs)
chr3 (14-123)||(21584821-21584930)
chr3 (14-110)||(24497483-24497579)
chr3 (14-105)||(24923684-24923775)
chr3 (14-110)||(25084900-25084996)
chr3 (14-110)||(24920110-24920206)
chr3 (14-98)||(24981920-24982004)
chr3 (22-102)||(31825789-31825869)
[»] chr8 (1 HSPs)
chr8 (37-98)||(14261279-14261340)
[»] chr7 (2 HSPs)
chr7 (25-95)||(39955080-39955150)
chr7 (14-95)||(10575264-10575345)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 4e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 21584821 - 21584930
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcacctccctttccgagtcccttacctccctttccacggcctgacattttcaagagaaaatttgataa 113  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  21584821 tgttatcacgaagaactttcctgtgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaatttgagaa 21584920  T
Q  114 acaaagaaaa 123  Q
    ||| ||||||    
T  21584921 acagagaaaa 21584930  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 24497483 - 24497579
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcacctccctttccgagtcccttacctccctttccacggcctgacattttcaagagaaaatttga 110  Q
    |||| ||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24497483 tgttgtcacgaagaaccttcctatgcctctttgcacctccctttccgagtcccttacctccctttccacgccctgacattttcaagagaaaatttga 24497579  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 24923684 - 24923775
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcacctccctttccgagtcccttacctccctttccacggcctgacattttcaagagaaaa 105  Q
    |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  24923684 tgttatcacgaagaacctttctatgcctctttgcacctccctttccgagtcccttacctcccttaccacgacctgacattttcaagagaaaa 24923775  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 25084996 - 25084900
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcacctccctttccgagtcccttacctccctttccacggcctgacattttcaagagaaaatttga 110  Q
    |||||||||| ||||||||||| || |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  25084996 tgttatcacgaagaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttccacgacctgacattttcgcgagaaaatttga 25084900  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 24920110 - 24920206
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcacctccctttccgagtcccttacctccctttccacggcctgacattttcaagagaaaatttga 110  Q
    |||||||||| ||||| || || || |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||  ||||||||||||    
T  24920110 tgttatcacgaagaactttcctatgcctctttgcacctccctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaatttga 24920206  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 24982004 - 24981920
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcacctccctttccgagtcccttacctccctttccacggcctgacattttcaa 98  Q
    |||||||||| ||||| || || || |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  24982004 tgttatcacgaagaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttccacgccctgacattttcaa 24981920  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 31825789 - 31825869
Alignment:
Q  22 cggagaacctttctgtgtctctttgcacctccctttccgagtcccttacctccctttccacggcctgacattttcaagaga 102  Q
    |||||||| |||||||| || ||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||    
T  31825789 cggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagaga 31825869  T

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Target: chr8 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 14261279 - 14261340
Alignment:
Q  37 tgtctctttgcacctccctttccgagtcccttacctccctttccacggcctgacattttcaa 98  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  14261279 tgtctctttgcacctccctttcctaatcccttacctccctttccacgacctgacattttcaa 14261340  T

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Target: chr7 (Bit Score: 43; Significance: 7e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 39955080 - 39955150
Alignment:
Q  25 agaacctttctgtgtctctttgcacctccctttccgagtcccttacctccctttccacggcctgacatttt 95  Q
    |||||||||||||| |||||||| ||||||||||| | |||||| ||||| |||||||| |||||||||||    
T  39955080 agaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttt 39955150  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 10575345 - 10575264
Alignment:
Q  14 tgttatcacggagaacctttctgtgtctctttgcacctccctttccgagtcccttacctccctttccacggcctgacatttt 95  Q
    |||| |||||||||||||| |  |||||||||||||| |||||||| | ||| ||||||||||||||||| || ||||||||    
T  10575345 tgttgtcacggagaaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttccacgaccagacatttt 10575264  T

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