View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299-Insertion-20 (Length: 147)
Name: NF4299-Insertion-20
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299-Insertion-20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 8437556 - 8437422
Alignment:
| Q |
1 |
atatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctccacacacttcactaagttataactaatgtaaaaagttan |
100 |
Q |
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| T |
8437556 |
atatatttccttgagaacaaaactaaactgttacacgtttcagcatacgccctctgccctccacacacttca-----------ctaatgtaaaaagtta- |
8437469 |
T |
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| Q |
101 |
nnnnnngcttattatagtgtgtacatgtttatattttcattttgaca |
147 |
Q |
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| T |
8437468 |
ttttttgcttattatagtgtgtacatgtttatattttcattttgaca |
8437422 |
T |
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