View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299-Insertion-21 (Length: 176)
Name: NF4299-Insertion-21
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299-Insertion-21 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 9e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 9e-47
Query Start/End: Original strand, 6 - 156
Target Start/End: Original strand, 24553512 - 24553662
Alignment:
| Q |
6 |
ttggcatgttatatatgttcaaattcttggatagtattaatgtgatatctgttttgaaatgtttttcttaatgatttgggcactggagggttaagtcaat |
105 |
Q |
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| T |
24553512 |
ttggcatgttatatatgttcaaattcttggatagtattaaagtaatatctgttttgaaatgttttttcaatttctttgggaattggagggtaaagtcaat |
24553611 |
T |
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| Q |
106 |
atggttaaggtgaaatttctagttggtgttctcataatcttatgaatgata |
156 |
Q |
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| T |
24553612 |
atggttaaggtgaaattgctagctggtgttctcataatcttaagaatgata |
24553662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 24563602 - 24563742
Alignment:
| Q |
20 |
atgttcaaattcttggatagtattaatgtgatatctgttttgaaatgtttttcttaatgatttgggcactggagggttaagtcaatatggttaaggtgaa |
119 |
Q |
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| T |
24563602 |
atgttcaaattcttggatagtataaacataatatctgttttgaaatgtttatcc-aatgatttgggcattggagggttaggtcaatatggttaaggtgaa |
24563700 |
T |
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| Q |
120 |
atttctagttggtgttctcataatcttatgaatgatactgtta |
162 |
Q |
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| T |
24563701 |
atttctagttggtgttctcataatctcatg-atgatactgtta |
24563742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 174
Target Start/End: Original strand, 24563757 - 24563784
Alignment:
| Q |
147 |
atgaatgatactgttagtaacctttctt |
174 |
Q |
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| T |
24563757 |
atgaatgatactgttagtaacctttctt |
24563784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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