View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299-Insertion-26 (Length: 190)
Name: NF4299-Insertion-26
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299-Insertion-26 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 53460856 - 53460779
Alignment:
| Q |
113 |
gagaccaggatggaaaaatattttcagaccacgtcgaaaatcacaatctcgctgaatagtggcgatgttgttcaaaag |
190 |
Q |
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| T |
53460856 |
gagaccacgatggaaaaatattttcagaccatgtcaaaaatcacaatctcgctgaatagtggcgatgttgttcaaaag |
53460779 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 53460996 - 53460949
Alignment:
| Q |
6 |
caaccaaccacgagaagatgagagaacaaccaaataaggagcaatgac |
53 |
Q |
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| T |
53460996 |
caaccaaccacgagaagatgagagaacaaccaaataaggagcaatgac |
53460949 |
T |
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