View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299-Insertion-27 (Length: 111)
Name: NF4299-Insertion-27
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299-Insertion-27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 1543987 - 1544093
Alignment:
| Q |
5 |
aataactacccggggcaacaaaaccacatggcagggatgtctccaaatgctggttggtcaaataatcagtagactctcgtcctgacctctgagtaatgag |
104 |
Q |
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| T |
1543987 |
aataactactcggggcaacaaaaccacatggcagggatgtctccaaatgctggttggtcaaataatcagtagactctcgtcctgacctccgagtaatgag |
1544086 |
T |
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| Q |
105 |
attttat |
111 |
Q |
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| T |
1544087 |
attttat |
1544093 |
T |
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Target: chr2 (Bit Score: 51; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 32421779 - 32421859
Alignment:
| Q |
5 |
aataactacccggggcaacaaaacca---catggcagggatgtctccaaatgctggttggtcaaataatcagtagactctc |
82 |
Q |
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| T |
32421779 |
aataactacctggggcaacaaaaccagaacattgcagggatgcctccaaatgctggatggtcaaataatcagtagactctc |
32421859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 32425725 - 32425770
Alignment:
| Q |
44 |
tctccaaatgctggttggtcaaataatcagtagactctcgtcctga |
89 |
Q |
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| T |
32425725 |
tctccaaatgcaggatgggcaaataatcagtagactctcgtcctga |
32425770 |
T |
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