View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_high_10 (Length: 495)
Name: NF4299_high_10
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 206 - 477
Target Start/End: Complemental strand, 48261993 - 48261722
Alignment:
| Q |
206 |
gtctatctattaatcattcaattcaaccgagttcaaccgattgaaccatatgatttgaagatctcacatgttcatatccttttatttaaaagctttgact |
305 |
Q |
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| T |
48261993 |
gtctatctattaatcattcaattcaaccgagttcaaccgattgaaccatatgatttgaagatctcacatgttcatatccttttatttaaaagctttgact |
48261894 |
T |
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| Q |
306 |
ttgaccttatatttgccaaaagctatctctttgggacagtagtgtttaggttaaataaactaaagaataatatcttgatttctagcagtaacagccattt |
405 |
Q |
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| T |
48261893 |
ttgaccttatatttgccaaaagctatctctttgagacagtagtgtttaggttaaataaactaaagaataatatcttgatttctagcagtaacaaccattt |
48261794 |
T |
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| Q |
406 |
cttaaggaaatttcaatctgctcaagttttctgcccatagagaaagggatttgtggggtggagggacggtgt |
477 |
Q |
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| T |
48261793 |
cttaaggaaatttcaatctgctcaagttttctgcccatagagaaagggatttgtggggtggagggacggtgt |
48261722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 48262198 - 48262022
Alignment:
| Q |
1 |
gttataatagtacaaagttgtagaaaaaaggatgcccctgtacatgaatttcaaatgatgctttaaaaattggatgaaattgtcttttgaaccgagaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48262198 |
gttataatagtacaaagttgtagaaaaaaggatgcccctgtacatgaatttcaaatgatgctttaaaaattggatgaaattgtcttttgaacagagaatc |
48262099 |
T |
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| Q |
101 |
gatcagtttgacaattggtttggtcccgctttcaaactatttggctgaatcaaattgaacgtgtgcgattcaaccaa |
177 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |
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| T |
48262098 |
gatcagtttgacaattggtttggtcccgctttcaaattgtttggctgaatcaaattgaacgtgtgcaattcaaccaa |
48262022 |
T |
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