View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_high_11 (Length: 488)
Name: NF4299_high_11
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 13 - 471
Target Start/End: Original strand, 52807052 - 52807513
Alignment:
| Q |
13 |
catcaatatcattgtagattacatcaattaatgaaaacggcaatctctctccgttattatttgtcaaatttataggttcacacctataaaatacaatggt |
112 |
Q |
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| T |
52807052 |
catcaatatcactgtagattacatcaattaatgacaacggcagtctctctccgttattatttgtcaaatttataggttcacacctataaaatacaatggt |
52807151 |
T |
|
| Q |
113 |
gtctttggccttcaatttcttatccttcacaaaccgattccatcctctagtgaacacatagctctggctgctcttccaatagcaatatcgaaacttccac |
212 |
Q |
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| T |
52807152 |
gtctttggccttcaatttcttatccttcacaaaccgattccatcctctagtgaacacatagctctggctgctcttccaatagcaatatcgaaacttccac |
52807251 |
T |
|
| Q |
213 |
aatcgcatgagtttgtcataaaacacaacttctaagtccttgccacaacccaaaggaatataggtaactgcatgttttttcgggacgacaagcctattga |
312 |
Q |
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| T |
52807252 |
aatcgcatgagtttgtcataaaacacaacttccacgtcattgccacaaaccaaaggaaaataggtaactgcatgttttttcgggacgacaagcctattga |
52807351 |
T |
|
| Q |
313 |
gtttaccaacatcacttggtgttaattctttttgaaaaagtagttgtgtgcaagaaaattgttcctcacccttcacccctataacaacaccttctttgcc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52807352 |
gtttaccaacatcacttggtgttaattctttttgaaaaagtagttgtgtgcaagaaaattgttcctcatccttcacccctataacaacaccttctttgcc |
52807451 |
T |
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| Q |
413 |
tgcaccttgg---ctttcattatttctaagaaatgttgttgcaaaattagaggggtatgttc |
471 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807452 |
tgcaccttggcgcctttcattatttctaagaaatgttgttgcaaaattagaggggtatgttc |
52807513 |
T |
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