View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_high_16 (Length: 394)
Name: NF4299_high_16
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 32 - 379
Target Start/End: Complemental strand, 30202579 - 30202240
Alignment:
| Q |
32 |
tgggttgcaatgcatggacatgagatacaatatgctaaagaataaccaagtaacaagactttgtaagacatcattcgtattatagaagatggtatgggag |
131 |
Q |
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| T |
30202579 |
tgggttgcaatgcatggacatgagatacaataggctaaagaataaccaagtaacaagactttgtaagacatcattagtattatagaagatggtatgggag |
30202480 |
T |
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| Q |
132 |
aataatagaagtgatgatgagaagagggttttgagcatatttggaagagaccggctccatccaaagtgatcactttctcttggaaactactccttgatag |
231 |
Q |
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| T |
30202479 |
aataatagaagtgatgatgagaagagagttttgagcatatttggaagagtccggctccatccaaagtgatcactttctcctggaaactactccttgatag |
30202380 |
T |
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| Q |
232 |
aattccgacaagaatgaatcgtgcgtgtagaaatgtattaacccaagaaagttcacaaaactgtgttttatgtgatgaggtagtggatcatgtatgcatc |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30202379 |
aattccgacaagaatgaatcgtgcgtgtagaaatgtattaacccaagaaagttcacaaaactgtgttttatgtgatgaggtagtggat--------catc |
30202288 |
T |
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| Q |
332 |
tatttctccattgcggggtggctatgaattttggaataaggtaatgat |
379 |
Q |
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|| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30202287 |
taattctccattgcagggtggctatgaattttggaataaggtaatgat |
30202240 |
T |
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