View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_high_24 (Length: 327)
Name: NF4299_high_24
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 28925545 - 28925242
Alignment:
| Q |
11 |
cagagaccgatggcaaagtgttgggaagttatgttagaatcaaatccgacccaaatgactatttacagaagaattctcatctgctcgtacaagtcaaagg |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28925545 |
cagaaaccgatggcaaagtgttgggaagttatgttagaatcaaatccgacccaaatgactatttacaaaagaattctcatctgctcgtacaagtcaaagg |
28925446 |
T |
|
| Q |
111 |
taatcttggtcttcgcttaaagttactggtctgaaaaaataaaccatacaattttttattaaaagttaagtagttagttttgctggcttcagattttcaa |
210 |
Q |
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| T |
28925445 |
tactcttggtctttgcttaaagttactggtctgaaaaaataaaccatacaattttttattaacagctaagtagttagttttgctagcttcagattttcaa |
28925346 |
T |
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| Q |
211 |
gtacagtaccgatactatcatattctcatttttcttggtcttatttctaaaatcttgtttttgcttcatgattaaatgtattcttttaagtagaagagga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28925345 |
gtacagtaccgatactatcatattctcatttttcttggtcttatttctaaaatcttgtttttgcttcatgattaaatgtattattttaagtagaagagga |
28925246 |
T |
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| Q |
311 |
tcat |
314 |
Q |
| |
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|||| |
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| T |
28925245 |
tcat |
28925242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 28901884 - 28901740
Alignment:
| Q |
19 |
gatggcaaagtgttgggaagttatgttagaatcaaatccgacccaaatgactatttacagaagaattctcatctgctcgtacaagtcaaaggtaatcttg |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
28901884 |
gatggcaaagtgttgggaagttatgttagaaccaaatccgacccaaatgactatttacagaagaattctcatctgctcttacaagtcataggtaatcttg |
28901785 |
T |
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| Q |
119 |
gtcttcgcttaaagttactggtctgaaaaaataaaccatacaatt |
163 |
Q |
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| T |
28901784 |
gttttcgcttaaagttactggtctgaaaaaataaaccatacaatt |
28901740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 28916297 - 28916123
Alignment:
| Q |
21 |
tggcaaagtgttgggaagttatgttagaatcaaatccgacccaaatgactatttacagaagaattctcatctgctcgtacaagtcaaaggtaatcttggt |
120 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||||||||| |
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| T |
28916297 |
tggcaaagtgttgggaagttatgttagaaccaaatccgacccaaatgactatttacagaagaattctcatctgcttttagaagtaacaggtaatcttggt |
28916198 |
T |
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| Q |
121 |
cttcgctt-aaagttactggtctgaaaaaataaaccatacaattttttattaaaagttaagtagttagttttgct |
194 |
Q |
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| T |
28916197 |
cttcgcttaaaacttactggtctgaaaaaatctagcatacaactttttattaaaagtacagtagttagttttgct |
28916123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 28901730 - 28901614
Alignment:
| Q |
198 |
ttcagattttcaagtacagtaccgatactatcatattctcatttttcttggtcttatttctaaaatcttgtttttgcttcatgattaaatgtattctttt |
297 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
28901730 |
ttcagattttcaagtacagtactgatactattgtattctcatttttcttggtctcatttctaaaatcttgtttttgcttcatgatttcgtatattctttt |
28901631 |
T |
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| Q |
298 |
aagtagaagaggatcat |
314 |
Q |
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| ||| ||||||||||| |
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| T |
28901630 |
atgtataagaggatcat |
28901614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 28891930 - 28891826
Alignment:
| Q |
19 |
gatggcaaagtgttgggaagttatgttagaatcaaatccgacccaaatgactatttacagaagaattctcatctgctcgtacaagtcaaaggtaatcttg |
118 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
28891930 |
gatgtcaaagtgttgggaagttttgttagaatcaaatccgaccgaaatgattatttacagaaaaattctcatctgctcgtacaagtaataggtaatcttt |
28891831 |
T |
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| Q |
119 |
gtctt |
123 |
Q |
| |
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||||| |
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| T |
28891830 |
gtctt |
28891826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 28935130 - 28935006
Alignment:
| Q |
19 |
gatggcaaagtgttgggaagttatgttagaatcaaatccgaccc-aaatgactatttacagaagaattctcatctgctcgtacaagtcaaaggtaatctt |
117 |
Q |
| |
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|||| ||||||||||||| ||| |||||||| |||| ||||||| |||||||||||||||||||||||| ||||| ||||||||||| | |||||||||| |
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| T |
28935130 |
gatgacaaagtgttgggatgttttgttagaaccaaaaccgaccccaaatgactatttacagaagaattcccatcttctcgtacaagtaataggtaatctt |
28935031 |
T |
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| Q |
118 |
ggtcttcgcttaaagttactggtct |
142 |
Q |
| |
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| || || || ||||||||||||| |
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| T |
28935030 |
gatcatcactagaagttactggtct |
28935006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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