View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_high_26 (Length: 307)
Name: NF4299_high_26
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 73 - 289
Target Start/End: Complemental strand, 6412323 - 6412107
Alignment:
| Q |
73 |
tcccatcaagtactataaatactaagcatcccccatagttacaagacacaaacatttctttcatttgccaaagatagtgtaatacatttaagcatcaaag |
172 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6412323 |
tcccatcaagtactataaatactaagcatcccacaaggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaagcatcaaag |
6412224 |
T |
|
| Q |
173 |
atgacttcattgaacatggtcacaaagctgaagggaactgtggttttgatgaaaaagaatgcattgaactacaaagttattggtggtaatactgttgtcg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6412223 |
atgacttcattgaacatggtcacaaagctgaagggaactgtggttttgatgaaaaagaatgcattgaactacaaagttattggtggtaatactgttgttg |
6412124 |
T |
|
| Q |
273 |
agaatgaaggtgatacc |
289 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
6412123 |
agaatgaaggtgatacc |
6412107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 65 - 289
Target Start/End: Complemental strand, 6393190 - 6392967
Alignment:
| Q |
65 |
ctaaatgttcccatcaagtactataaatactaagcatcccccatagttacaagacacaaacatttctttcatttgccaaagatagtgtaatacatttaag |
164 |
Q |
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||||||| |||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6393190 |
ctaaatgatcccatcaagtagtataaataccaagcatcccc-atggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaag |
6393092 |
T |
|
| Q |
165 |
catcaaagatgacttcattgaacatggtcacaaagctgaagggaactgtggttttgatgaaaaagaatgcattgaactacaaagttattggtggtaatac |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6393091 |
catcaaagatgacttcattgaacatggtcacaaagctgaagggaactgtggttttgatgaaaaagaatgcattgaactacaaagttattggtggtaatac |
6392992 |
T |
|
| Q |
265 |
tgttgtcgagaatgaaggtgatacc |
289 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
6392991 |
tgttgttgagaatgaaggtgatacc |
6392967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 6373267 - 6373157
Alignment:
| Q |
73 |
tcccatcaagtactataaatactaagcatcccccatagttacaagacacaaacatttctttcatttgccaaagatagtgtaatacatttaagcatcaaag |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6373267 |
tcccatcaagtactataaatagtaagcatccccaatggttacaagacacaaacatttctttcatttgacaaagatagtgtaatacatttaagcatcaaag |
6373168 |
T |
|
| Q |
173 |
atgacttcatt |
183 |
Q |
| |
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||||||||||| |
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| T |
6373167 |
atgacttcatt |
6373157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 6365599 - 6365493
Alignment:
| Q |
77 |
atcaagtactataaatactaagcatcccccatagttacaagacacaaacatttctttcatttgccaaagatagtgtaatacatttaagcatcaaagatga |
176 |
Q |
| |
|
||||| ||||||||||||||||||||||| | || |||| |||||| | |||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
6365599 |
atcaactactataaatactaagcatcccct-tggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaagcattaaagatga |
6365501 |
T |
|
| Q |
177 |
cttcattg |
184 |
Q |
| |
|
||||||| |
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|
| T |
6365500 |
gttcattg |
6365493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 7463269 - 7463185
Alignment:
| Q |
78 |
tcaagtactataaatactaagcatcccccatagttacaagacacaaacatttctttcatttgccaaagatagtgtaatacatttaa |
163 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||| |||||| |
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| T |
7463269 |
tcaactactatagatactaagca-cccccatggttacaagacacaggcatttctttcatttaccaaatatagtgtaatatatttaa |
7463185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 6356170 - 6356084
Alignment:
| Q |
76 |
catcaagtactataaatactaagcatcccccatagttacaagacacaaacatttctttcatttgccaaagatagtgtaatacatttaa |
163 |
Q |
| |
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|||||| ||||||||||||||| || |||| || |||||||||||||| | |||||||||||| ||| | |||||||||||||||||| |
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|
| T |
6356170 |
catcaactactataaatactaacca-cccctatggttacaagacacaagcctttctttcatttaccatatatagtgtaatacatttaa |
6356084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 6373664 - 6373607
Alignment:
| Q |
110 |
gttacaagacacaaacatttctttcatttgccaaagatagtgtaatacatttaagcat |
167 |
Q |
| |
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|||| ||||||||| | ||||||||||| |||||||||| |||||||| ||||||||| |
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| T |
6373664 |
gttaaaagacacaagcttttctttcattagccaaagatattgtaatacgtttaagcat |
6373607 |
T |
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