View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_high_28 (Length: 291)
Name: NF4299_high_28
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 48818387 - 48818106
Alignment:
| Q |
1 |
cattttcatatattattatcgtatcattcgtgaataaacaaaa-tataattattgatatgcggaaataatgattttcattttatatagagaaattgattg |
99 |
Q |
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| T |
48818387 |
cattttcatatattattatcgtatcattcgtgaataaagaaaaatataattattgatatgcggaaataatgattttcattttatatagagaaattgattg |
48818288 |
T |
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| Q |
100 |
ataacgtattaacgtgtgtgcattcactgctatataagatcaccctgaggagcttacatttcacacaacaaacaccaagacatagtgaagcttgttatag |
199 |
Q |
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| T |
48818287 |
ataacctattaacgtgtgtgcattcactgctatataagatcaccctgaggagcttacatttcacacaacaaacaccaagacatagtgaagcttgttatag |
48818188 |
T |
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| Q |
200 |
cgcacaatggctttttccaccaccatgaaacttgttcttttctctgcactcacactcctctcattccaatcagtgttctctg |
281 |
Q |
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| T |
48818187 |
ctcaccatggctttttccaccaccatgaaacttgttcttttctctgcactcacactcctctcattccaatcagtgttctctg |
48818106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 48792650 - 48792555
Alignment:
| Q |
183 |
agtgaagcttgttatagcgcacaatggctttttccaccaccatgaaacttgttcttttctctgcactcacactcctctcattccaatcagtgttctctg |
281 |
Q |
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||||||||| | |||||| |||| |||||| |||||||||||||||| | ||||||||| | || |||||||||| |||||| ||||| |||||| |
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| T |
48792650 |
agtgaagctagctatagctcacagtggctt---ccaccaccatgaaactagctcttttctcagttcttacactcctctacttccaagcagtggtctctg |
48792555 |
T |
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