View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4299_high_32 (Length: 244)

Name: NF4299_high_32
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4299_high_32
NF4299_high_32
[»] chr8 (5 HSPs)
chr8 (1-244)||(39435501-39435744)
chr8 (135-244)||(8462561-8462669)
chr8 (99-244)||(29216846-29216990)
chr8 (102-211)||(43776127-43776236)
chr8 (100-175)||(16840208-16840283)
[»] chr5 (17 HSPs)
chr5 (84-244)||(19315051-19315211)
chr5 (85-244)||(26778767-26778926)
chr5 (136-219)||(27482744-27482827)
chr5 (68-244)||(18967728-18967904)
chr5 (115-182)||(4926731-4926798)
chr5 (115-218)||(16861366-16861469)
chr5 (108-212)||(39059046-39059150)
chr5 (108-159)||(804531-804582)
chr5 (115-184)||(15773088-15773157)
chr5 (98-157)||(8487955-8488014)
chr5 (115-185)||(6612296-6612366)
chr5 (96-214)||(39839807-39839925)
chr5 (108-241)||(30722562-30722695)
chr5 (115-185)||(17971963-17972033)
chr5 (115-185)||(31124185-31124255)
chr5 (180-244)||(12831561-12831625)
chr5 (180-244)||(12863536-12863600)
[»] chr1 (18 HSPs)
chr1 (105-244)||(44675007-44675146)
chr1 (68-244)||(22583238-22583414)
chr1 (96-243)||(34703531-34703678)
chr1 (100-241)||(4889357-4889498)
chr1 (135-241)||(25392373-25392479)
chr1 (68-217)||(25529918-25530068)
chr1 (114-244)||(31069566-31069696)
chr1 (115-244)||(9484767-9484896)
chr1 (139-244)||(36098668-36098773)
chr1 (144-244)||(52626459-52626557)
chr1 (115-214)||(40708521-40708620)
chr1 (96-242)||(2653773-2653919)
chr1 (108-159)||(26260666-26260717)
chr1 (135-214)||(32160011-32160090)
chr1 (115-185)||(51800472-51800542)
chr1 (115-192)||(3926688-3926765)
chr1 (115-192)||(27099687-27099764)
chr1 (115-159)||(46271934-46271978)
[»] chr7 (14 HSPs)
chr7 (99-243)||(17116452-17116596)
chr7 (71-242)||(49035451-49035620)
chr7 (68-244)||(12092551-12092727)
chr7 (115-244)||(34237076-34237205)
chr7 (115-181)||(16560013-16560079)
chr7 (115-181)||(16605583-16605649)
chr7 (115-176)||(9628122-9628183)
chr7 (120-176)||(35516619-35516675)
chr7 (108-214)||(10314986-10315092)
chr7 (115-185)||(14315499-14315569)
chr7 (135-181)||(41216317-41216363)
chr7 (180-214)||(41529377-41529411)
chr7 (108-161)||(24905198-24905251)
chr7 (192-244)||(4997991-4998043)
[»] chr6 (10 HSPs)
chr6 (83-244)||(17292814-17292974)
chr6 (99-243)||(29599217-29599360)
chr6 (105-243)||(9907070-9907208)
chr6 (135-214)||(34714857-34714936)
chr6 (75-156)||(10303297-10303378)
chr6 (115-244)||(11324389-11324518)
chr6 (115-213)||(7155343-7155439)
chr6 (119-157)||(22732726-22732764)
chr6 (98-159)||(5667498-5667559)
chr6 (135-236)||(14216076-14216177)
[»] chr4 (20 HSPs)
chr4 (87-244)||(30972436-30972593)
chr4 (135-244)||(22653229-22653338)
chr4 (136-244)||(9831327-9831435)
chr4 (106-214)||(52577897-52578005)
chr4 (96-242)||(45637333-45637479)
chr4 (115-176)||(13609063-13609124)
chr4 (115-244)||(25130489-25130618)
chr4 (102-159)||(26169354-26169411)
chr4 (129-241)||(43001645-43001757)
chr4 (102-161)||(5727048-5727107)
chr4 (102-161)||(5760911-5760970)
chr4 (105-199)||(8813912-8814006)
chr4 (109-159)||(13136996-13137046)
chr4 (131-181)||(16584351-16584401)
chr4 (115-185)||(29521770-29521840)
chr4 (115-185)||(40435066-40435136)
chr4 (105-210)||(22495449-22495554)
chr4 (195-244)||(27270054-27270103)
chr4 (115-159)||(5634774-5634818)
chr4 (180-244)||(20510380-20510444)
[»] chr2 (15 HSPs)
chr2 (99-244)||(30505621-30505766)
chr2 (96-213)||(35590126-35590243)
chr2 (135-244)||(27009140-27009249)
chr2 (135-244)||(31640182-31640290)
chr2 (132-244)||(27708234-27708346)
chr2 (114-214)||(38332124-38332224)
chr2 (135-244)||(9840708-9840817)
chr2 (102-214)||(38408896-38409008)
chr2 (144-238)||(37120943-37121037)
chr2 (135-241)||(44736026-44736132)
chr2 (135-236)||(2167548-2167649)
chr2 (141-237)||(33645891-33645987)
chr2 (108-159)||(29691028-29691079)
chr2 (98-244)||(39117323-39117469)
chr2 (115-159)||(37738219-37738263)
[»] chr3 (18 HSPs)
chr3 (115-244)||(14788789-14788918)
chr3 (129-241)||(25845584-25845696)
chr3 (99-214)||(8074731-8074846)
chr3 (115-182)||(44781768-44781835)
chr3 (102-244)||(25408674-25408815)
chr3 (129-214)||(20017500-20017585)
chr3 (108-171)||(3459260-3459323)
chr3 (102-161)||(18650818-18650877)
chr3 (102-161)||(18690243-18690302)
chr3 (109-159)||(3857744-3857794)
chr3 (132-214)||(4740938-4741020)
chr3 (115-185)||(39770833-39770903)
chr3 (131-181)||(51346337-51346387)
chr3 (103-172)||(3694843-3694912)
chr3 (141-182)||(18764423-18764464)
chr3 (140-241)||(33388624-33388725)
chr3 (115-159)||(11452976-11453020)
chr3 (129-161)||(42105697-42105729)
[»] scaffold0027 (1 HSPs)
scaffold0027 (115-242)||(45051-45178)
[»] scaffold0047 (1 HSPs)
scaffold0047 (117-243)||(64336-64462)
[»] scaffold0078 (1 HSPs)
scaffold0078 (115-169)||(166-220)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 39435744 - 39435501
Alignment:
Q  1 ctttgatcattagtttgttgatgtttgatcacccctaaactctccaaaagcgattaattaagattatctatggtggtggcggcgctaaggtacgacgatc 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39435744 ctttgatcattagtttgatgatgtttgatcacccctaaactctccaaaagcgattaattaagattatctatggtggtggcggcgctaaggtacgacgatt 39435645  T
Q  101 aatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39435644 aatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggtt 39435545  T
Q  201 gataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  39435544 gataagattaagtcactcgagttcatgtggttgaaggcgaaatt 39435501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 8462669 - 8462561
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttga 234  Q
    ||||||| ||||||||||||||||| | ||||||| | ||||||||| |||||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  8462669 gaaatttagaaagaaagaaataaca-gatattcaaaggcaaagaatgttcggttgtgcaggtggttgataagattaagtcactcacattcatgtggttga 8462571  T
Q  235 aggcgaaatt 244  Q
    ||||||||||    
T  8462570 aggcgaaatt 8462561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 29216846 - 29216990
Alignment:
Q  99 tcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtgg 198  Q
    ||||| ||||| ||| |||||||| | | ||| |||||| ||||||||||||||||||||| | | ||||| ||| |||||||||||||  | |||||||    
T  29216846 tcaatattacatgttgtttggtttactattgtttgagaattttggaaagaaagaaataacaggcttttcaaagac-aagaatgctcggtgatacaggtgg 29216944  T
Q  199 ttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    | ||||||||||| |  ||||  || ||||||||||||| ||||||    
T  29216945 tggataagattaaatatctcgcgtttatgtggttgaaggtgaaatt 29216990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 43776127 - 43776236
Alignment:
Q  102 atcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttg 201  Q
    |||||| ||||  ||||||||||||  ||||| ||||||||||||||||||||||| | | ||||||||||||||   |||||  ||| ||||||||| |    
T  43776127 atcttataggtcatttggtttgcaacagtgtgggaaatttggaaagaaagaaataataggatattcaatgacaaaatttgctctatttcgcaggtggtgg 43776226  T
Q  202 ataagattaa 211  Q
    ||||||||||    
T  43776227 ataagattaa 43776236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 16840208 - 16840283
Alignment:
Q  100 caatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaa 175  Q
    |||| ||||||||| | |||||||||| |  ||| ||||||||||||||||||||||||| |||||| || |||||    
T  16840208 caattttacaggttatctggtttgcaactacgtgggaaatttggaaagaaagaaataacaagttatttaacgacaa 16840283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 84 - 244
Target Start/End: Complemental strand, 19315211 - 19315051
Alignment:
Q  84 gctaaggtacgacgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgct 183  Q
    |||||||| ||||| ||||| | |||| || |||||||||| |  || || ||||||||||||||||||||||||| ||||||||| | ||||||||| |    
T  19315211 gctaaggttcgacgttcaatatgacagattatttggtttgctaccgtttgggaaatttggaaagaaagaaataacaggttattcaaaggcaaagaatggt 19315112  T
Q  184 cggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    ||||  |||||||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  19315111 cggtaatgcaggtggttgataagattaagtcactcacatttatgtggttgaaggcgaaatt 19315051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 26778926 - 26778767
Alignment:
Q  85 ctaaggtacgacgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctc 184  Q
    ||||||| ||||| |||| ||| |||||| |||| |||||||| ||||| |||||||| |||||||||||||| | |||||| |||| || |||||   |    
T  26778926 ctaaggtgcgacgctcaaacttgcaggttatttgctttgcaagcgtgtgtgaaatttgtaaagaaagaaataataggttatttaatggcagagaatatcc 26778827  T
Q  185 ggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    | || || |||||||| | ||||||||||| || | ||||||||||||||||| ||||||    
T  26778826 gattgtgtaggtggttaacaagattaagtctctagcattcatgtggttgaaggtgaaatt 26778767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 27482827 - 27482744
Alignment:
Q  136 aaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcg 219  Q
    |||||||||||||||||||||||| ||| || ||||| ||||||||||||||  | ||||||||||||||||||||||| ||||    
T  27482827 aaatttggaaagaaagaaataacaggttgtttaatgataaagaatgctcggtaattcaggtggttgataagattaagtccctcg 27482744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 244
Target Start/End: Original strand, 18967728 - 18967904
Alignment:
Q  68 ctatggtggtggcggcgctaaggtacgacgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattc 167  Q
    |||||| ||||| ||||||||||  | ||||| |||  | ||||| ||||||||||| |  |||||| ||||||||||||||| ||||||||  |||||     
T  18967728 ctatggcggtggtggcgctaaggcgcaacgattaattatgcaggtgctttggtttgctaccgtgtgaaaaatttggaaagaaataaataacagattattt 18967827  T
Q  168 aatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    ||||  |||||||||||| | ||  ||| | | || ||||||||||||||    || ||||||||||||||||||||    
T  18967828 aatggtaaagaatgctcgatattataggagatagacaagattaagtcactttcttttatgtggttgaaggcgaaatt 18967904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 4926731 - 4926798
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgc 182  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| | |||| ||| |||||||||    
T  4926731 tttggtttgctactgtgtgagaaatttggaaagaaagaaataacatgattttcattgataaagaatgc 4926798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 16861469 - 16861366
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||| | |||||||| ||| |||| ||| | |||| | | || ||||||||||||||    
T  16861469 tttgatttgctagtgtgtgggaaatatggaaagaaagaaataacatgatcttcaatgataaacaatgttcgatattgcggttagtggataagattaagtc 16861370  T
Q  215 actc 218  Q
    ||||    
T  16861369 actc 16861366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 39059046 - 39059150
Alignment:
Q  108 caggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataaga 207  Q
    ||||| ||||||||||| |  || ||||||||||||||||||||||| |||| | | |||||||  ||||| |||||  |||| || |||||||||||||    
T  39059046 caggtgctttggtttgctacggtatgagaaatttggaaagaaagaaacaacaagattttcaatgcaaaagagtgctccattttacaagtggttgataaga 39059145  T
Q  208 ttaag 212  Q
    |||||    
T  39059146 ttaag 39059150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 804582 - 804531
Alignment:
Q  108 caggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    |||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  804582 caggttatttggtttgcaacagtgtgagaaatttggaaagaaagaaataaca 804531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 15773088 - 15773157
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctc 184  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||| | || ||||  |||||||||||    
T  15773088 tttggtttgttagtatgtgagaaatttggaaagaaagaaataacatgatctttaatggtaaagaatgctc 15773157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 8487955 - 8488014
Alignment:
Q  98 atcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataa 157  Q
    ||||||| |||||||| ||||||||||||  ||||| ||||| |||||||||||||||||    
T  8487955 atcaatcatacaggttatttggtttgcaacagtgtgggaaatatggaaagaaagaaataa 8488014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 6612296 - 6612366
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcg 185  Q
    |||||||||| | |||||||||||| ||||||||||||||||||| | | ||||| |  ||||||||||||    
T  6612296 tttggtttgctactgtgtgagaaatatggaaagaaagaaataacaggattttcaacggtaaagaatgctcg 6612366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 39839807 - 39839925
Alignment:
Q  96 cgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcagg 195  Q
    |||||||| |||||||||||||||| ||| | |  ||| ||||| || ||||||| |||||| | ||| |||||||||||||| ||| |  |  | ||||    
T  39839807 cgatcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaaaaaataataggttgttcaatgacaaagagtgccctatcctacagg 39839906  T
Q  196 tggttgataagattaagtc 214  Q
    |||||||||| ||||||||    
T  39839907 tggttgataaaattaagtc 39839925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 30722695 - 30722562
Alignment:
Q  108 caggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataaga 207  Q
    |||||| |||||| ||||  ||| || ||||||||||| |||||||| || ||| | || |||| ||||||||||||||||   |||||||| || || |    
T  30722695 caggttatttggtatgcagttgtttgggaaatttggaaggaaagaaacaatatgctgtttaatgtcaaagaatgctcggttaatcaggtggtagacaata 30722596  T
Q  208 ttaagtcactcgaattcatgtggttgaaggcgaa 241  Q
    ||||||| || |  || | |||||||||||||||    
T  30722595 ttaagtcgcttgcctttacgtggttgaaggcgaa 30722562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 17972033 - 17971963
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcg 185  Q
    |||||||||| | |||||| ||||| ||||||||||||||||||||  | | |||||| |||||| |||||    
T  17972033 tttggtttgctactgtgtgggaaatatggaaagaaagaaataacataatttccaatgataaagaaagctcg 17971963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 31124185 - 31124255
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcg 185  Q
    |||||||||| | |||||| ||||| ||||||||||||||||||| | | |||||||  ||||| ||||||    
T  31124185 tttggtttgctactgtgtgggaaatctggaaagaaagaaataacaggattttcaatgctaaagagtgctcg 31124255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 12831625 - 12831561
Alignment:
Q  180 tgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    |||||||| || |||||||||||||||||||||||  ||   || ||||||||||||| ||||||    
T  12831625 tgctcggtattacaggtggttgataagattaagtcgatctcttttatgtggttgaaggtgaaatt 12831561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 12863600 - 12863536
Alignment:
Q  180 tgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    |||||||| || |||||||||||||||||||||||  ||   || ||||||||||||| ||||||    
T  12863600 tgctcggtattacaggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatt 12863536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 44675007 - 44675146
Alignment:
Q  105 ttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgata 204  Q
    ||||||||| |||||||||||| ||||||||||||||  ||||||| |||||||| ||||||||||| | ||||||||||| |  |||| ||||||||||    
T  44675007 ttacaggttatttggtttgcaactgtgtgagaaatttataaagaaataaataacaggttattcaatggctaagaatgctcgatcgtgcaagtggttgata 44675106  T
Q  205 agattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    |||||||| |||| | ||||||||||||||||||||||||    
T  44675107 agattaagccacttgcattcatgtggttgaaggcgaaatt 44675146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 244
Target Start/End: Complemental strand, 22583414 - 22583238
Alignment:
Q  68 ctatggtggtggcggcgctaaggtacgacgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattc 167  Q
    ||||| |||||| || ||||||| ||||||||||||  | ||||| ||||||||||| |   |||| ||||||||||| |||||||| ||||   |||||    
T  22583414 ctatgctggtggtggtgctaaggcacgacgatcaattatgcaggtgctttggtttgctatcatgtgggaaatttggaaggaaagaaacaacaaaatattc 22583315  T
Q  168 aatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    ||||| |||||||||||| | || |||||||| |||||||| ||||||||    |||||||||||||||||||||||    
T  22583314 aatgataaagaatgctcgatgttacaggtggtagataagatgaagtcactttccttcatgtggttgaaggcgaaatt 22583238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 243
Target Start/End: Complemental strand, 34703678 - 34703531
Alignment:
Q  96 cgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcagg 195  Q
    |||||||| ||||| ||| | |||| ||| | ||| || ||||| ||||||||||||||||||||||||||||  || | |  |||||||||| | ||||    
T  34703678 cgatcaattttacaagttatctggtatgctactgtctgggaaatatggaaagaaagaaataacatgttattcacagatagaacatgctcggttcttcagg 34703579  T
Q  196 tggttgataagattaagtcactcgaattcatgtggttgaaggcgaaat 243  Q
    ||||||||||||||||||| |||   || |||||||||||||||||||    
T  34703578 tggttgataagattaagtccctcacttttatgtggttgaaggcgaaat 34703531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 241
Target Start/End: Original strand, 4889357 - 4889498
Alignment:
Q  100 caatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggt 199  Q
    |||| ||||| ||| |||||||||||| |  ||||||||||| ||||||||||||||||| ||||||||||  ||||||||||||  | |   | |||||    
T  4889357 caattttacaagttatttggtttgcaattacgtgagaaatttagaaagaaagaaataacaggttattcaatagcaaagaatgctcaatgtcttatgtggt 4889456  T
Q  200 tgataagattaagtcactcgaattcatgtggttgaaggcgaa 241  Q
    |||||| |||||||| || | |||||||||||| ||||||||    
T  4889457 tgataaaattaagtcgcttgcattcatgtggttcaaggcgaa 4889498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 25392479 - 25392373
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttga 234  Q
    |||||||||||||||||| |||||| ||||||||| | ||||||||| | |||  ||||| || |||||||||||||||| |||| ||  ||||||||||    
T  25392479 gaaatttggaaagaaagagataacaagttattcaaaggcaaagaatgtttggtaatgcagatgattgataagattaagtcgctcgcatgtatgtggttga 25392380  T
Q  235 aggcgaa 241  Q
    |||||||    
T  25392379 aggcgaa 25392373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 25529918 - 25530068
Alignment:
Q  68 ctatggtggtggcggcgctaaggtacgacgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattc 167  Q
    ||||| |||||| || ||||||| ||||||||||||  | ||||| ||||||||||| |  ||||| |||||||||||||||||||| |||||| |||||    
T  25529918 ctatgctggtggtggtgctaaggcacgacgatcaattatgcaggtgctttggtttgctaccgtgtgggaaatttggaaagaaagaaacaacatgatattc 25530017  T
Q  168 aa-tgacaaagaatgctcggttttgcaggtggttgataagattaagtcact 217  Q
    || | | |||||||||||  | || ||  |||| |||||||||||||||||    
T  25530018 aatttaaaaagaatgctccatattacaattggtggataagattaagtcact 25530068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 31069566 - 31069696
Alignment:
Q  114 ctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagt 213  Q
    ||||||||||| | |||||| |||||||||||||||||| ||||||||||||| ||||  ||||||  |||  | || |||||||| || ||||||||||    
T  31069566 ctttggtttgctattgtgtgggaaatttggaaagaaagatataacatgttatttaatggtaaagaagtctcaatattacaggtggtagacaagattaagt 31069665  T
Q  214 cactcgaattcatgtggttgaaggcgaaatt 244  Q
    || |    |||||||||||||||||||||||    
T  31069666 cattttccttcatgtggttgaaggcgaaatt 31069696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 9484767 - 9484896
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    |||||||||| |||||||| |||||||| |||||||||||||||| | |||||||||  |||||||| ||| | |||||  | || ||||||||||||||    
T  9484767 tttggtttgctagtgtgtgggaaatttgaaaagaaagaaataacaagatattcaatggtaaagaatgttcgatattgcaaatagtagataagattaagtc 9484866  T
Q  215 actcgaattcatgtggttgaaggcgaaatt 244  Q
    | |    ||| |||||||||||||||||||    
T  9484867 aatttccttcttgtggttgaaggcgaaatt 9484896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 36098773 - 36098668
Alignment:
Q  139 tttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggc 238  Q
    ||||||||||||||||||||||||| || ||||| || ||||| |||||  | |||||||||| ||| |||||||| ||||  || | |||| |||||||    
T  36098773 tttggaaagaaagaaataacatgttgtttaatgataaggaatgatcggtaattcaggtggttggtaatattaagtctctcgcctttaggtggctgaaggc 36098674  T
Q  239 gaaatt 244  Q
     |||||    
T  36098673 aaaatt 36098668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 52626459 - 52626557
Alignment:
Q  144 aaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaat 243  Q
    ||||||||||||||||   |||  |||||||||||||||||| || |||||||| ||||||||||||||   ||  |||||||||||||| |||| ||||    
T  52626459 aaagaaagaaataacagactatctaatgacaaagaatgctcgattatgcaggtgattgataagattaag--cctataattcatgtggttggaggcaaaat 52626556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 40708620 - 40708521
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    ||||||||||||  ||||  |||||||| |||||||||||||||| |||||| ||||  |||||||||  | || |||||||||| || || ||||||||    
T  40708620 tttggtttgcaaccgtgtaggaaatttgaaaagaaagaaataacaagttatttaatggtaaagaatgccagattgtgcaggtggtagacaaaattaagtc 40708521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 242
Target Start/End: Complemental strand, 2653919 - 2653773
Alignment:
Q  96 cgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcagg 195  Q
    ||||| || ||||||||  ||||||||||||  ||||| |||||||||||||||||||| || | | | ||||| |||||| | || ||  ||  |||||    
T  2653919 cgatccattttacaggtcatttggtttgcaacggtgtgggaaatttggaaagaaagaaacaataggattttcaacgacaaaaattgttctattccgcagg 2653820  T
Q  196 tggttgataagattaagtcactcgaattcatgtggttgaaggcgaaa 242  Q
    |||| ||||| |||||||||||    |||| ||||||||||| ||||    
T  2653819 tggtggataaaattaagtcacttactttcacgtggttgaaggggaaa 2653773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 26260666 - 26260717
Alignment:
Q  108 caggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    |||||| ||||||||||||  || |||||||||||||| |||||||||||||    
T  26260666 caggttatttggtttgcaacggtttgagaaatttggaaggaaagaaataaca 26260717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 32160011 - 32160090
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    ||||| ||||| |||||||| || | ||| ||||||| |||||| ||||||||| | |||||| | ||||||||||||||    
T  32160011 gaaatatggaaggaaagaaacaataggttgttcaatgtcaaagattgctcggttatccaggtgatcgataagattaagtc 32160090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 51800472 - 51800542
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcg 185  Q
    |||||||||| |  ||||| ||||| ||||||||||||||||||| | | |||||||| ||||| ||||||    
T  51800472 tttggtttgctatagtgtgggaaatatggaaagaaagaaataacaggattttcaatgataaagagtgctcg 51800542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 3926765 - 3926688
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgc 192  Q
    |||||||||  | |||||| |||||||||||||||||||||||||   | |||||||  ||||| |||||| ||||||    
T  3926765 tttggtttgttaatgtgtgggaaatttggaaagaaagaaataacagaattttcaatggtaaagagtgctcgattttgc 3926688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 27099764 - 27099687
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgc 192  Q
    |||||||||| | ||||||  |||| ||||||||||||||||||| | | |||||||  ||||| |||||| ||||||    
T  27099764 tttggtttgctactgtgtggaaaatatggaaagaaagaaataacaagattttcaatgctaaagattgctcgattttgc 27099687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 46271934 - 46271978
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    |||||||||| | |||||| ||||| |||||||||||||||||||    
T  46271934 tttggtttgctactgtgtgggaaatctggaaagaaagaaataaca 46271978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 17116596 - 17116452
Alignment:
Q  99 tcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtgg 198  Q
    ||||| ||||| ||| |||||||||| |   | |||||||||||||||||||||||||||| ||||||||| | |||||| ||||||||  | || ||||    
T  17116596 tcaattttacaagttatttggtttgctatcatttgagaaatttggaaagaaagaaataacaggttattcaaaggcaaagattgctcggtaatacaagtgg 17116497  T
Q  199 ttgataagattaagtcactcgaattcatgtggttgaaggcgaaat 243  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  17116496 ttgataagattaagtcactcgcatttatgtggttgaaggcgaaat 17116452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 49035620 - 49035451
Alignment:
Q  71 tggtggtggcggcgctaaggtacgacgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaat 170  Q
    ||||||||  ||||||||||   ||| ||| || || |||||| |||||||| ||| |||||||||||||||||||||||  |||||||  |||||||||    
T  49035620 tggtggtgttggcgctaaggcgagacaatcgattttgcaggttttttggtttccaactgtgtgagaaatttggaaagaaaagaataacagattattcaat 49035521  T
Q  171 gacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaa 242  Q
    | ||||||||||||  | ||||||||||||||||| ||||| ||||||| ||||  ||||||||||||||||    
T  49035520 ggcaaagaatgctcaatcttgcaggtggttgataatattaaatcactcgcattc--gtggttgaaggcgaaa 49035451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 244
Target Start/End: Original strand, 12092551 - 12092727
Alignment:
Q  68 ctatggtggtggcggcgctaaggtacgacgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattc 167  Q
    ||||| |||||| || ||||||| ||||||||||||  | ||||| ||||||||| | |  |||||  |||||||||| ||| |||||||||   |||||    
T  12092551 ctatgctggtggtggtgctaaggcacgacgatcaattatgcaggtgctttggttttctaccgtgtggaaaatttggaaggaaggaaataacagaatattc 12092650  T
Q  168 aatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    ||||  |||||||||||| | || |||||||| |||||||||||||||||    |||||||||||||||||||||||    
T  12092651 aatgctaaagaatgctcgatcttacaggtggtagataagattaagtcactttccttcatgtggttgaaggcgaaatt 12092727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 34237076 - 34237205
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    |||||||||| |  |||||||||||||||||||||| |||||||||||| ||||  ||||||||||| || ||  | ||||||||||| || ||||||||    
T  34237076 tttggtttgctacagtgtgagaaatttggaaagaaaaaaataacatgtttttcagagacaaagaatgttcagtaattcaggtggttgacaaaattaagtc 34237175  T
Q  215 actcgaattcatgtggttgaaggcgaaatt 244  Q
     ||||  ||   ||||||||||||||||||    
T  34237176 tctcgttttttggtggttgaaggcgaaatt 34237205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 16560013 - 16560079
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatg 181  Q
    |||||||||| |  ||||| ||||| ||||||||||||||||||| |||||||||||  ||||||||    
T  16560013 tttggtttgctacggtgtgggaaatatggaaagaaagaaataacaggttattcaatggaaaagaatg 16560079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 16605649 - 16605583
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatg 181  Q
    |||||||||| |  ||||| ||||| ||||||||||||||||||| |||||||||||  ||||||||    
T  16605649 tttggtttgctacggtgtgggaaatatggaaagaaagaaataacaggttattcaatggaaaagaatg 16605583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 9628122 - 9628183
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaa 176  Q
    ||||||||||||  ||||| |||||||||||||| |||||||||| | | ||||||||||||    
T  9628122 tttggtttgcaacagtgtgggaaatttggaaagagagaaataacagggtcttcaatgacaaa 9628183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 35516619 - 35516675
Alignment:
Q  120 tttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaa 176  Q
    ||||||| |||||| ||||||||||||||||||||||||| | | ||||||| ||||    
T  35516619 tttgcaattgtgtgggaaatttggaaagaaagaaataacaaggttttcaatggcaaa 35516675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 10314986 - 10315092
Alignment:
Q  108 caggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataaga 207  Q
    |||||| |||||| ||||  ||| || ||||||||||| |||||||| || | | | || |||| ||||||||||||||||   |||||||| || ||||    
T  10314986 caggttatttggtatgcagttgtttgggaaatttggaaggaaagaaacaataggctgtttaatgtcaaagaatgctcggttaatcaggtggtagacaaga 10315085  T
Q  208 ttaagtc 214  Q
    |||||||    
T  10315086 ttaagtc 10315092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 14315569 - 14315499
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcg 185  Q
    |||||||||| | || ||| ||||||||||| ||||||||||||| | |||||||||| ||| | ||||||    
T  14315569 tttggtttgctactgcgtgggaaatttggaaggaaagaaataacaggatattcaatgataaacattgctcg 14315499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 41216363 - 41216317
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatg 181  Q
    ||||| |||||||||||||||||||| ||||||||||  ||||||||    
T  41216363 gaaatatggaaagaaagaaataacattttattcaatggtaaagaatg 41216317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 41529377 - 41529411
Alignment:
Q  180 tgctcggttttgcaggtggttgataagattaagtc 214  Q
    ||||||||||| |||||||||||||||||||||||    
T  41529377 tgctcggttttacaggtggttgataagattaagtc 41529411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 24905251 - 24905198
Alignment:
Q  108 caggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatg 161  Q
    |||||| ||||||||||||  ||||| ||||||||||||||||| || ||||||    
T  24905251 caggttatttggtttgcaacagtgtgggaaatttggaaagaaaggaacaacatg 24905198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 4998043 - 4997991
Alignment:
Q  192 caggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    |||||||| |||||||||||||| |||   || ||||||||||||||||||||    
T  4998043 caggtggtggataagattaagtccctcacttttatgtggttgaaggcgaaatt 4997991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 244
Target Start/End: Complemental strand, 17292974 - 17292814
Alignment:
Q  83 cgctaaggtacgacgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgc 182  Q
    |||||||| ||| || |||||||| |||||| ||||||||||||  || || ||||||||||||||||||||||||||| |||| |||| |||||||||     
T  17292974 cgctaaggcacggcgttcaatctttcaggttatttggtttgcaaccgtatgggaaatttggaaagaaagaaataacatg-tatttaatggcaaagaatga 17292876  T
Q  183 tcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    ||| || ||||||||||   |||||||||||| || | ||||||||||||||| || |||||    
T  17292875 tcgattatgcaggtggtcattaagattaagtctctagcattcatgtggttgaacgccaaatt 17292814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 29599360 - 29599217
Alignment:
Q  99 tcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtgg 198  Q
    ||||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||||||| | |||||| ||||  ||| |||| ||| || |||||||||    
T  29599360 tcaatctgacaggttatttggtttgcaagcgtgtgggaaatttggaaagaaagaaataataagttatttaatg-gaaaaaatgttcgattgtgcaggtgg 29599262  T
Q  199 ttgataagattaagtcactcgaattcatgtggttgaaggcgaaat 243  Q
    | || |||||||||||  | |   ||||||||||||||| |||||    
T  29599261 tagacaagattaagtctgtagctgtcatgtggttgaaggtgaaat 29599217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 9907070 - 9907208
Alignment:
Q  105 ttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgata 204  Q
    |||||||||||||||||||||| |  ||| ||||||||||||||||||||||||| |||||| |||| ||| ||   |||  ||   |||||||| ||||    
T  9907070 ttacaggttctttggtttgcaacttcgtgggaaatttggaaagaaagaaataacaggttatttaatggcaaggatacctctattcctcaggtggtagata 9907169  T
Q  205 agattaagtcactcgaattcatgtggttgaaggcgaaat 243  Q
    | |||||||| ||||  |||||||||||||||| |||||    
T  9907170 aaattaagtcgctcgctttcatgtggttgaaggagaaat 9907208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 34714857 - 34714936
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    ||||||| ||||||||||||||| | | |||| || |||||||||||||||||  | || ||||||||||||||||||||    
T  34714857 gaaattttgaaagaaagaaataataggctattgaaagacaaagaatgctcggtaatacacgtggttgataagattaagtc 34714936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 10303378 - 10303297
Alignment:
Q  75 ggtggcggcgctaaggtacgacgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaata 156  Q
    ||||| ||| ||||||| |||| ||| ||||| |||||| |||||||||| | |||||| ||||| ||||||||||||||||    
T  10303378 ggtggtggctctaaggtgcgacaatctatcttgcaggttatttggtttgctattgtgtgggaaatatggaaagaaagaaata 10303297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 11324389 - 11324518
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    |||||||||| |  |||||  |||||||||| ||||||||||||| | | |||||||||||||  ||||||||| | ||| |||| || ||||||||||     
T  11324389 tttggtttgctacggtgtggaaaatttggaaggaaagaaataacaggctcttcaatgacaaagtttgctcggttcttcagatggtagacaagattaagtt 11324488  T
Q  215 actcgaattcatgtggttgaaggcgaaatt 244  Q
     || |  || | ||||||||||||||||||    
T  11324489 gcttgcttttacgtggttgaaggcgaaatt 11324518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 7155343 - 7155439
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagt 213  Q
    |||||||||| |  || |||||||||||||| |||| |  ||||| | |||| || ||||||||||| ||||| || ||| ||||||||||||||||||    
T  7155343 tttggtttgctatggtttgagaaatttggaaggaaata--taacaggctatttaacgacaaagaatgttcggtattacagatggttgataagattaagt 7155439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 22732764 - 22732726
Alignment:
Q  119 gtttgcaagtgtgtgagaaatttggaaagaaagaaataa 157  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  22732764 gtttgcaactgtgtgagaaatatggaaagaaagaaataa 22732726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 5667559 - 5667498
Alignment:
Q  98 atcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    |||||| ||||||||| ||||||||||||  || || ||||||||||| ||||| |||||||    
T  5667559 atcaattttacaggttatttggtttgcaacagtttgggaaatttggaaggaaaggaataaca 5667498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 14216177 - 14216076
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttga 234  Q
    ||||| ||||||||||| ||||| | | |||| |||| ||||||||||||  || |||||||| |||||||  ||||||| ||    |||||||||||||    
T  14216177 gaaatatggaaagaaaggaataatagggtatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcgctgacgttcatgtggttga 14216078  T
Q  235 ag 236  Q
    ||    
T  14216077 ag 14216076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 30972593 - 30972436
Alignment:
Q  87 aaggtacgacgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcgg 186  Q
    |||| |||||||||||| |||||||||||||||| ||||| |  |||  |||||||||||||||||||||||||| | || |||| |||||| |||||      
T  30972593 aaggcacgacgatcaattttacaggttctttggtatgcaactacgtggaaaatttggaaagaaagaaataacatgctctttaatggcaaagagtgctcaa 30972494  T
Q  187 ttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    || |||||||||||||||| |||||||| ||    ||||||||| |||||||||||||    
T  30972493 ttatgcaggtggttgataaaattaagtcgctgactttcatgtggctgaaggcgaaatt 30972436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 22653229 - 22653338
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttga 234  Q
    |||||||| |||||||||||||||| | ||||||| ||||||  |||||||||  | |||||||||||||||||||| || |||  ||| ||||||||||    
T  22653229 gaaatttgaaaagaaagaaataacaggctattcaaagacaaactatgctcggtaatacaggtggttgataagattaaatcgctcacatttatgtggttga 22653328  T
Q  235 aggcgaaatt 244  Q
    ||||||||||    
T  22653329 aggcgaaatt 22653338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 9831327 - 9831435
Alignment:
Q  136 aaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaa 235  Q
    |||||||||||||||||||||||||| | || ||| | ||||| ||||| ||| | |||||||| |||||||| ||||| || |  || | |||||||||    
T  9831327 aaatttggaaagaaagaaataacatgctgtttaataataaagactgctctgttattcaggtggtggataagatcaagtctcttgcttttaggtggttgaa 9831426  T
Q  236 ggcgaaatt 244  Q
    |||||||||    
T  9831427 ggcgaaatt 9831435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 52577897 - 52578005
Alignment:
Q  106 tacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataa 205  Q
    |||||||  |||||||||| |  ||||| ||||| ||||| ||||||||||||| | | |||||||| ||||  ||||||||| | |||||| | |||||    
T  52577897 tacaggtcatttggtttgctacggtgtgggaaatctggaaggaaagaaataacaggcttttcaatgataaagtttgctcggttcttcaggtgatagataa 52577996  T
Q  206 gattaagtc 214  Q
    |||||||||    
T  52577997 gattaagtc 52578005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 242
Target Start/End: Original strand, 45637333 - 45637479
Alignment:
Q  96 cgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcagg 195  Q
    ||||| || ||||||||  ||||||||||||  ||||| |||||||||||||||||||| || | | | ||||| |||||| | || ||  ||  |||||    
T  45637333 cgatccattttacaggtcatttggtttgcaacggtgtgggaaatttggaaagaaagaaacaataggattttcaacgacaaaaattgttctattccgcagg 45637432  T
Q  196 tggttgataagattaagtcactcgaattcatgtggttgaaggcgaaa 242  Q
    |||| ||||| |||||||||||    |||| ||||||||||| ||||    
T  45637433 tggtggataaaattaagtcacttactttcacgtggttgaaggggaaa 45637479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 13609124 - 13609063
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaa 176  Q
    ||||||||||||  ||||| |||||||||||||| |||||||||| | | ||||||||||||    
T  13609124 tttggtttgcaacagtgtgggaaatttggaaagagagaaataacagggtcttcaatgacaaa 13609063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 244
Target Start/End: Complemental strand, 25130618 - 25130489
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    ||||||||||||  ||||| ||||| ||||||||||| || |||| ||| || || |  | | |||||||  || |||| ||||| |||||||| |||||    
T  25130618 tttggtttgcaatagtgtgggaaatatggaaagaaaggaacaacaagttgtttaagggaacaaaatgctcaattgtgcaagtggtcgataagatcaagtc 25130519  T
Q  215 actcgaattcatgtggttgaaggcgaaatt 244  Q
     ||||  |||||||||||||||| ||||||    
T  25130518 cctcgctttcatgtggttgaaggagaaatt 25130489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 26169411 - 26169354
Alignment:
Q  102 atcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    |||||||| ||| ||||||||||||  | ||||||||| |||||||||||||||||||    
T  26169411 atcttacaagttatttggtttgcaacagcgtgagaaatatggaaagaaagaaataaca 26169354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 43001645 - 43001757
Alignment:
Q  129 gtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgt 228  Q
    ||||| |||||||||||| ||||||| || |  ||||||||||| ||||||||||||   |  ||  | || |||||||||||||||||   ||| ||||    
T  43001645 gtgtgggaaatttggaaaaaaagaaacaatagattattcaatgataaagaatgctcgacatctcaaatcgtggataagattaagtcactaacatttatgt 43001744  T
Q  229 ggttgaaggcgaa 241  Q
    |||||||||||||    
T  43001745 ggttgaaggcgaa 43001757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 5727048 - 5727107
Alignment:
Q  102 atcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatg 161  Q
    |||||||| ||| |||||||||| || || || |||||||||||||||| ||||||||||    
T  5727048 atcttacaagttatttggtttgctagcgtttgggaaatttggaaagaaataaataacatg 5727107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 5760911 - 5760970
Alignment:
Q  102 atcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatg 161  Q
    |||||||| ||| |||||||||| || || || |||||||||||||||| ||||||||||    
T  5760911 atcttacaagttatttggtttgctagcgtttgggaaatttggaaagaaataaataacatg 5760970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 8813912 - 8814006
Alignment:
Q  105 ttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggt 199  Q
    ||||||||| ||||||||||||  || || |||||||||||||||||||| || | | | ||||| |||||| | |||||  || ||||||||||    
T  8813912 ttacaggttatttggtttgcaacagtctgggaaatttggaaagaaagaaacaataggatcttcaacgacaaaaattgctctattgtgcaggtggt 8814006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 13136996 - 13137046
Alignment:
Q  109 aggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    ||||| ||||||||||||| ||||| ||||| || ||||||||||||||||    
T  13136996 aggttatttggtttgcaagagtgtgggaaatatgaaaagaaagaaataaca 13137046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 16584351 - 16584401
Alignment:
Q  131 gtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatg 181  Q
    |||| |||| || |||||||||||||||| |||||||||||| ||||||||    
T  16584351 gtgaaaaatatgaaaagaaagaaataacaagttattcaatgataaagaatg 16584401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 29521840 - 29521770
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcg 185  Q
    |||||| ||| || ||||| |||||||||||| |||||||||||| ||||||  |||  ||||||||||||    
T  29521840 tttggtatgctagcgtgtgggaaatttggaaacaaagaaataacaggttatttgatggtaaagaatgctcg 29521770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 40435066 - 40435136
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcg 185  Q
    |||||||||| | | |||| ||||| ||||||||||||||||||||  | |||||||| |||||| |||||    
T  40435066 tttggtttgctattatgtgggaaatctggaaagaaagaaataacataattttcaatgataaagaaagctcg 40435136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 22495554 - 22495449
Alignment:
Q  105 ttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgata 204  Q
    ||||||| | |||| |||||||  ||||| ||||||| |||||| |||||||||| | | |||||||||||| |||| ||  ||   ||||||||||| |    
T  22495554 ttacaggctatttgatttgcaacagtgtgggaaatttagaaagagagaaataacagggtcttcaatgacaaaaaatgttcaattcaacaggtggttgaca 22495455  T
Q  205 agatta 210  Q
    ||||||    
T  22495454 agatta 22495449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 27270103 - 27270054
Alignment:
Q  195 gtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    ||||||||||| ||||||||| ||   |||||||||||||||||||||||    
T  27270103 gtggttgataaaattaagtcaatcactttcatgtggttgaaggcgaaatt 27270054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 5634774 - 5634818
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    |||||||||||| |||||| ||| | |||||||||||||||||||    
T  5634774 tttggtttgcaactgtgtgggaattgtggaaagaaagaaataaca 5634818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 20510380 - 20510444
Alignment:
Q  180 tgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    |||||||| || |||||||||||||||||||||||  ||   || ||||||||||||| ||||||    
T  20510380 tgctcggtattacaggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatt 20510444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 244
Target Start/End: Original strand, 30505621 - 30505766
Alignment:
Q  99 tcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtgg 198  Q
    ||||| ||||||||| |||||||||| | ||| |||||||||||||||||||||||||||| | ||||||| |||||| ||| |||| |  | || ||||    
T  30505621 tcaatattacaggttatttggtttgctactgtttgagaaatttggaaagaaagaaataacaggctattcaaagacaaaaaatactcgataatacatgtgg 30505720  T
Q  199 ttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    |||||||||||||||  |||| ||| || | |||||||| ||||||    
T  30505721 ttgataagattaagtttctcgcatttatctagttgaaggagaaatt 30505766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 35590126 - 35590243
Alignment:
Q  96 cgatcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcagg 195  Q
    ||||| || ||||| |||||||||| ||||| |  ||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||||||  || | ||||    
T  35590126 cgatctattttacatgttctttggtatgcaactacgtgggaaatctggaaagaaagaaataacaggtttttcaatggcaaagaatgctcaattattcagg 35590225  T
Q  196 tggttgataagattaagt 213  Q
    |||||||||| |||||||    
T  35590226 tggttgataaaattaagt 35590243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 27009140 - 27009249
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttga 234  Q
    ||||||| ||||||||||||||| | | |||| || ||||||||| |||||||  | || |||||||||||||||||||| ||||  || | ||| ||||    
T  27009140 gaaattttgaaagaaagaaataataggctattgaaagacaaagaacgctcggtaatacacgtggttgataagattaagtctctcgcttttaggtgattga 27009239  T
Q  235 aggcgaaatt 244  Q
    ||||||||||    
T  27009240 aggcgaaatt 27009249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 31640182 - 31640290
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttga 234  Q
    ||||||||||| ||||||||||||| ||  |||||||||||||  ||||| ||| | || ||||| ||||||||||||||||| |  || | ||||||||    
T  31640182 gaaatttggaaggaaagaaataacaggtccttcaatgacaaagtttgctc-gttcttcaagtggtagataagattaagtcacttgcttttacgtggttga 31640280  T
Q  235 aggcgaaatt 244  Q
    ||||||||||    
T  31640281 aggcgaaatt 31640290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 27708346 - 27708234
Alignment:
Q  132 tgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggt 231  Q
    |||||||| |||||||||||||||||||  ||||| |  ||||||  ||||| |||  | ||||||||||||||||||||||| ||||  || | |||||    
T  27708346 tgagaaatctggaaagaaagaaataacagattatttacagacaaaacatgcttggtaattcaggtggttgataagattaagtcgctcgcttttacgtggt 27708247  T
Q  232 tgaaggcgaaatt 244  Q
    | |||||||||||    
T  27708246 taaaggcgaaatt 27708234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 38332224 - 38332124
Alignment:
Q  114 ctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagt 213  Q
    ||||||||||| | ||||||  ||||||||||||||||||| |||||| | || ||||  |||||||||||  || | ||||||||||||||||| ||||    
T  38332224 ctttggtttgctactgtgtggaaaatttggaaagaaagaaacaacatgatttttaatgctaaagaatgctccattatccaggtggttgataagataaagt 38332125  T
Q  214 c 214  Q
    |    
T  38332124 c 38332124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 9840708 - 9840817
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttga 234  Q
    ||||||||||||||||||||||||| | ||||||   |||||  |||||||||  | || ||||||||||||||||| || ||||  || ||||| ||||    
T  9840708 gaaatttggaaagaaagaaataacaggatattcacaaacaaatcatgctcggtaattcaagtggttgataagattaaatcgctcgcttttatgtgattga 9840807  T
Q  235 aggcgaaatt 244  Q
    |||| |||||    
T  9840808 aggcaaaatt 9840817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 38408896 - 38409008
Alignment:
Q  102 atcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttg 201  Q
    |||||||| ||| ||||||||||||  ||||||||||| || | |||||||||||||||  | || ||||  |||||||||||  || |||| ||||| |    
T  38408896 atcttacaagttatttggtttgcaatagtgtgagaaatatgaacagaaagaaataacataatttttaatgcaaaagaatgctcaattatgcaagtggtgg 38408995  T
Q  202 ataagattaagtc 214  Q
    | |||||||||||    
T  38408996 acaagattaagtc 38409008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 37121037 - 37120943
Alignment:
Q  144 aaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggc 238  Q
    |||||||||||||||||| ||||||| | ||| ||||||||  || | || ||||||||||| || ||||| |||  ||| ||||||||||||||    
T  37121037 aaagaaagaaataacatgatattcaaagtcaaggaatgctccattattcacgtggttgataaaataaagtcgctctcatttatgtggttgaaggc 37120943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 44736132 - 44736026
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttga 234  Q
    ||||||| ||||||||||||||||| ||| || |  ||||||  |||||||||  | |||||||| || ||||||||||| |||   || ||||||||||    
T  44736132 gaaatttagaaagaaagaaataacaggttttttacagacaaaatatgctcggtagttcaggtggtcgacaagattaagtccctcacttttatgtggttga 44736033  T
Q  235 aggcgaa 241  Q
    |||||||    
T  44736032 aggcgaa 44736026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 2167649 - 2167548
Alignment:
Q  135 gaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttga 234  Q
    ||||| ||||||||||| ||||||| |||||| |||| |||||| |||||  || ||||||| || || ||||||||||| | |   |||||||||||||    
T  2167649 gaaatatggaaagaaaggaataacaggttatttaatggcaaagattgctcaattatgcaggttgtcgagaagattaagtctcacactttcatgtggttga 2167550  T
Q  235 ag 236  Q
    ||    
T  2167549 ag 2167548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 33645987 - 33645891
Alignment:
Q  141 tggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaagg 237  Q
    |||||||||||||||||||||   || || || |||||||||||| |    ||| ||||||||||||||||||| |||| ||| | |||||||||||    
T  33645987 tggaaagaaagaaataacatgcattttaacgataaagaatgctcgataagtcagatggttgataagattaagtcgctcgcatttaggtggttgaagg 33645891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 29691028 - 29691079
Alignment:
Q  108 caggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    |||||| ||||||||||||  |||||||||||||| ||||||||||| ||||    
T  29691028 caggttatttggtttgcaacagtgtgagaaatttgaaaagaaagaaacaaca 29691079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 244
Target Start/End: Original strand, 39117323 - 39117469
Alignment:
Q  98 atcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtg 197  Q
    |||||| ||||||||| |||||| ||| | | |||| ||||| ||||||||||||||||||| ||| || |    ||||   ||||||||    ||||||    
T  39117323 atcaattttacaggttatttggtatgctactatgtgggaaatctggaaagaaagaaataacaggttgtttaccatcaaatcttgctcggtgactcaggtg 39117422  T
Q  198 gttgataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    || |||||||||||||| |||  ||| |||||||||| || ||||||    
T  39117423 gtggataagattaagtccctcacatttatgtggttgagggagaaatt 39117469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 37738263 - 37738219
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    |||||||||||| ||| || ||||| |||||||||||||||||||    
T  37738263 tttggtttgcaactgtctgggaaatctggaaagaaagaaataaca 37738219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 14788789 - 14788918
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    |||||||||| || ||||| ||||| ||||| |||||||||||||   | ||||||||||||  ||||||||||||  ||||||| ||||||||||||||    
T  14788789 tttggtttgctagggtgtgggaaatctggaaggaaagaaataacaaaattttcaatgacaaaatatgctcggttttataggtggtagataagattaagtc 14788888  T
Q  215 actcgaattcatgtggttgaaggcgaaatt 244  Q
     || |  || | ||||||||||||||||||    
T  14788889 ccttgcttttacgtggttgaaggcgaaatt 14788918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 25845584 - 25845696
Alignment:
Q  129 gtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgt 228  Q
    ||||| |||||||||||||||||||| ||||| ||||| || | |||||| || ||  || | |||||||||||||| |||||||| |||   |||||||    
T  25845584 gtgtgggaaatttggaaagaaagaaacaacatattatttaaaggcaaagattgttcaattgttcaggtggttgataaaattaagtcgctctctttcatgt 25845683  T
Q  229 ggttgaaggcgaa 241  Q
    |||||||||||||    
T  25845684 ggttgaaggcgaa 25845696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 8074846 - 8074731
Alignment:
Q  99 tcaatcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtgg 198  Q
    ||||| ||||||||  ||||||||||||   | ||| || ||||||| || |||||||||| |||||| |||| |||||||||||| ||| ||||| | |    
T  8074846 tcaatattacaggtcatttggtttgcaacattttgaaaattttggaaggagagaaataacaggttatttaatggcaaagaatgctcagttgtgcagattg 8074747  T
Q  199 ttgataagattaagtc 214  Q
    |||| |||||||||||    
T  8074746 ttgacaagattaagtc 8074731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 44781835 - 44781768
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgc 182  Q
    |||||||||| | |||||| |||||||||||||||||||||||||   | ||||||||||||||||||    
T  44781835 tttggtttgctactgtgtgggaaatttggaaagaaagaaataacagaattttcaatgacaaagaatgc 44781768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 25408674 - 25408815
Alignment:
Q  102 atcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttg 201  Q
    |||||||||||| ||||||||||||  ||||| ||||| |||||||||||||||||||   | || ||||| || |||||| |  || || || |||| |    
T  25408674 atcttacaggttatttggtttgcaaccgtgtgggaaatctggaaagaaagaaataacaacat-tttaatgaaaaggaatgcacaattatgaagatggtcg 25408772  T
Q  202 ataagattaagtcactcgaattcatgtggttgaaggcgaaatt 244  Q
    |||||||||||||  |   |||| |||||||||||||||||||    
T  25408773 ataagattaagtctataacattcgtgtggttgaaggcgaaatt 25408815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 20017585 - 20017500
Alignment:
Q  129 gtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    ||||| ||||| ||||| ||||||||||||| | | |||||||| |||| |||||||  ||| |||||||| || |||||||||||    
T  20017585 gtgtgggaaatatggaaggaaagaaataacaggctcttcaatgataaagtatgctcgaattttcaggtggtagaaaagattaagtc 20017500  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 3459260 - 3459323
Alignment:
Q  108 caggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatg 171  Q
    |||||| ||||||||||||   ||||  ||||||||||||||||||| |||| |||||||||||    
T  3459260 caggttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatg 3459323  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 18650818 - 18650877
Alignment:
Q  102 atcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatg 161  Q
    |||||||| ||| |||||||||| || || || |||||||||||||||| ||||||||||    
T  18650818 atcttacaagttatttggtttgctagcgtttgggaaatttggaaagaaataaataacatg 18650877  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 18690243 - 18690302
Alignment:
Q  102 atcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatg 161  Q
    |||||||| ||| |||||||||| || || || |||||||||||||||| ||||||||||    
T  18690243 atcttacaagttatttggtttgctagcgtttgggaaatttggaaagaaataaataacatg 18690302  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 3857794 - 3857744
Alignment:
Q  109 aggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    ||||| ||||||||||||   |||| |||||||||||||||||||||||||    
T  3857794 aggttatttggtttgcaacactgtgggaaatttggaaagaaagaaataaca 3857744  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 4740938 - 4741020
Alignment:
Q  132 tgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    |||||||| ||||| |||||||| || | ||| || |||| |||||| ||||||||| |  ||||||| ||||||||||||||    
T  4740938 tgagaaatatggaaggaaagaaacaataggttgtttaatgtcaaagattgctcggttatctaggtggtcgataagattaagtc 4741020  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 39770833 - 39770903
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcg 185  Q
    |||||||||| | |||||| |||||||||||||||| |||||||| | | |||||||  ||||| ||||||    
T  39770833 tttggtttgctattgtgtgggaaatttggaaagaaataaataacaggatcttcaatggtaaagagtgctcg 39770903  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 51346387 - 51346337
Alignment:
Q  131 gtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatg 181  Q
    ||||||||| ||||||||||||| ||||| |||||||||||  ||||||||    
T  51346387 gtgagaaatatggaaagaaagaattaacaggttattcaatggtaaagaatg 51346337  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 3694912 - 3694843
Alignment:
Q  103 tcttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatga 172  Q
    ||||||||||| | |||||||||  ||| || |||||||||||||||||||| |||| | |||| |||||    
T  3694912 tcttacaggttatatggtttgcatctgtatgggaaatttggaaagaaagaaacaacagggtatttaatga 3694843  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 18764464 - 18764423
Alignment:
Q  141 tggaaagaaagaaataacatgttattcaatgacaaagaatgc 182  Q
    ||||| ||| |||||||||||||||||||| |||||||||||    
T  18764464 tggaatgaacgaaataacatgttattcaataacaaagaatgc 18764423  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 33388725 - 33388624
Alignment:
Q  140 ttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgaattcatgtggttgaaggcg 239  Q
    ||||||||||||||||||||| ||||| || | ||||  |||| |  || || ||||||||||||  | |||||||| || ||||||||| |||||| ||    
T  33388725 ttggaaagaaagaaataacatattattaaaaggcaaaagatgcacaattatgtaggtggttgatagaagtaagtcacacgcattcatgtgattgaagacg 33388626  T
Q  240 aa 241  Q
    ||    
T  33388625 aa 33388624  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 11453020 - 11452976
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataaca 159  Q
    |||||||||| ||||||||  |||| |||||||||||||||||||    
T  11453020 tttggtttgctagtgtgtggaaaatctggaaagaaagaaataaca 11452976  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 42105697 - 42105729
Alignment:
Q  129 gtgtgagaaatttggaaagaaagaaataacatg 161  Q
    |||||||||||||| ||||||||||||||||||    
T  42105697 gtgtgagaaatttgaaaagaaagaaataacatg 42105729  T

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Target: scaffold0027 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 45051 - 45178
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtc 214  Q
    |||||| |||||  |||||||||||  ||||||||||||||| || ||||||||||| |||||||||||||   |  ||| | |||||||||||||||||    
T  45051 tttggtatgcaacggtgtgagaaataaggaaagaaagaaatagcaggttattcaatggcaaagaatgctcgacgtatcagattgttgataagattaagtc 45150  T
Q  215 actcgaattcatgtggttgaaggcgaaa 242  Q
    |||   ||   |||||||||||||||||    
T  45151 actttcatatttgtggttgaaggcgaaa 45178  T

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Target: scaffold0047 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 64462 - 64336
Alignment:
Q  117 tggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcac 216  Q
    |||||||||| |  ||| ||||||||||||||||||||||||| |||||| |||| ||| ||  | ||  ||   |||||||| ||||| |||||||| |    
T  64462 tggtttgcaactacgtgtgaaatttggaaagaaagaaataacaggttatttaatggcaaggatagttcaattcctcaggtggtagataaaattaagtccc 64363  T
Q  217 tcgaattcatgtggttgaaggcgaaat 243  Q
    |||  ||| |||||||||||| |||||    
T  64362 tcgctttcttgtggttgaaggagaaat 64336  T

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Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 166 - 220
Alignment:
Q  115 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaa 169  Q
    |||||||||| |  ||||||||||| ||||||||||||||||| | |||||||||    
T  166 tttggtttgctacggtgtgagaaatatggaaagaaagaaataataggttattcaa 220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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