View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_high_38 (Length: 229)
Name: NF4299_high_38
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 19805497 - 19805302
Alignment:
| Q |
19 |
aagagttgagagttaggttgtgagagtgtggggagaacataacagcatccatgaatcgacggaagttgtgcacccttctaataacggtgatgtgaagatc |
118 |
Q |
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| T |
19805497 |
aagagttgagagttaggttgtgagagtgtggggagaacataacagcatccatgaatcgacggaagttgtgcacccttctaataacggtgatgtgaagatc |
19805398 |
T |
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| Q |
119 |
ggggagtgagtagcataacgggcgccacctcttggaaagaacactggttttgaaagcttgtttgaacggaagaaaggagagtatgtgagttagtat |
214 |
Q |
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| T |
19805397 |
ggggagtgagtagcataacgggcgccacctcttggaaagaacactggttttgaaagcttgtttgaacggaagaaaggagagtatgtgagttagtat |
19805302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 13713146 - 13713198
Alignment:
| Q |
30 |
gttaggttgtgagagtgtggggagaacataacagcatccatgaatcgacggaa |
82 |
Q |
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| T |
13713146 |
gttaggtggtgagagtatgtggagaacataacagcgtccataaattgacggaa |
13713198 |
T |
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