View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4299_high_7 (Length: 518)

Name: NF4299_high_7
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4299_high_7
NF4299_high_7
[»] chr4 (4 HSPs)
chr4 (20-240)||(46325884-46326104)
chr4 (287-407)||(46325717-46325837)
chr4 (425-510)||(46325582-46325667)
chr4 (140-200)||(4386749-4386809)
[»] chr3 (1 HSPs)
chr3 (143-232)||(25116924-25117013)
[»] chr7 (1 HSPs)
chr7 (139-225)||(24521987-24522073)
[»] chr5 (2 HSPs)
chr5 (149-180)||(35090933-35090964)
chr5 (143-183)||(29564913-29564953)
[»] chr1 (2 HSPs)
chr1 (68-183)||(12134776-12134891)
chr1 (194-238)||(50568979-50569023)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 46326104 - 46325884
Alignment:
Q  20 agtgtgttaccatgttgacctgttattggtgcttgatgattactagctacatctccattgttaacactagtaatatcatggatactagaccttcttctat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46326104 agtgtgttaccatgttgacctgttattggtgcttgatgattactagcaacatctccattgttaacactagtaatatcatggatactagaccttcttctat 46326005  T
Q  120 ctctattcattgaattcaacctaatgaaatacttttgtgcatgacttgctacttgtgttggtgtcctagatatcacaaaattccttgatatgctcctcca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46326004 ctctattcattgaattcaacctaatgaaatacttttgtgcatgacttgctacttgtgttggtgtcctagatatcacaaaattccttgatatgctcctcca 46325905  T
Q  220 atctccttttccaaatttgtc 240  Q
    |||||||||||||||||||||    
T  46325904 atctccttttccaaatttgtc 46325884  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 46325837 - 46325717
Alignment:
Q  287 ttgttacttaattaaccatgttaattaattaccttgaattgaaatgaatccttgttgaaatttagtacatctagctcatatagctaatgaaatatatttg 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46325837 ttgttacttaattaaccatgttaattaattaccttgaattgaaatgtatgcttgttgaaatttagtacatctagctcatatagctaatgaaatatatttg 46325738  T
Q  387 tgcacagacaaacagatagat 407  Q
    |||| ||||||||||||||||    
T  46325737 tgcaaagacaaacagatagat 46325717  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 425 - 510
Target Start/End: Complemental strand, 46325667 - 46325582
Alignment:
Q  425 attgtaaatgtaattagaaagtacctatgctcttcttctgtccatggaattccttttctcctttcttgttctgacgatgatgatga 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46325667 attgtaaatgtaattagaaagtacctatgctcttcttctgtccatggaattccttttctcctttcttgttctgatgatgatgatga 46325582  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 4386809 - 4386749
Alignment:
Q  140 ctaatgaaatacttttgtgcatgacttgctacttgtgttggtgtcctagatatcacaaaat 200  Q
    ||||||||||||||||| ||||||||||| ||||||||| || |||| | | |||||||||    
T  4386809 ctaatgaaatacttttgagcatgacttgcaacttgtgtttgtatccttgttgtcacaaaat 4386749  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 25117013 - 25116924
Alignment:
Q  143 atgaaatacttttgtgcatgacttgctacttgtgttggtgtcctagatatcacaaaattccttgatatgctcctccaatctccttttcca 232  Q
    |||||||| || || ||||| || ||||||||||||||||||||||  |||||||| |||||||| ||| | |||||||| |||||||||    
T  25117013 atgaaatatttctgagcatggctagctacttgtgttggtgtcctagtgatcacaaagttccttgaaatgtttctccaatcaccttttcca 25116924  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 24522073 - 24521987
Alignment:
Q  139 cctaatgaaatacttttgtgcatgacttgctacttgtgttggtgtcctagatatcacaaaattccttgatatgctcctccaatctcc 225  Q
    ||||||||||||||| || ||||||||||| ||||| ||||||||||| |   |||| |||||||| || ||| | |||||||||||    
T  24522073 cctaatgaaatacttctgagcatgacttgcgacttgagttggtgtccttgtggtcacgaaattcctagagatgtttctccaatctcc 24521987  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 180
Target Start/End: Complemental strand, 35090964 - 35090933
Alignment:
Q  149 tacttttgtgcatgacttgctacttgtgttgg 180  Q
    ||||||||||||||||||||||||||||||||    
T  35090964 tacttttgtgcatgacttgctacttgtgttgg 35090933  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 29564953 - 29564913
Alignment:
Q  143 atgaaatacttttgtgcatgacttgctacttgtgttggtgt 183  Q
    |||||||||||||| ||||| ||||||||||| ||||||||    
T  29564953 atgaaatacttttgagcatggcttgctacttgagttggtgt 29564913  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 183
Target Start/End: Complemental strand, 12134891 - 12134776
Alignment:
Q  68 acatctccattgttaacactagtaatatcatggatactagaccttcttctatctctattcattgaattcaacctaatgaaatacttttgtgcatgacttg 167  Q
    |||||||| |||||||| || ||||| ||||| || || || | |||||| ||| | ||||| || ||||  | |||||| || ||||| ||||| ||||    
T  12134891 acatctccgttgttaacgcttgtaatgtcatgtatgctcgatcgtcttctgtctttgttcatcgagttcagtcgaatgaagtatttttgcgcatggcttg 12134792  T
Q  168 ctacttgtgttggtgt 183  Q
    ||||||||||||||||    
T  12134791 ctacttgtgttggtgt 12134776  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 50569023 - 50568979
Alignment:
Q  194 acaaaattccttgatatgctcctccaatctccttttccaaatttg 238  Q
    |||| ||||||||| ||||| |||||||||||||| |||||||||    
T  50569023 acaacattccttgaaatgcttctccaatctcctttcccaaatttg 50568979  T

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