View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4299_high_8 (Length: 516)

Name: NF4299_high_8
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4299_high_8
NF4299_high_8
[»] chr4 (6 HSPs)
chr4 (38-405)||(45733745-45734114)
chr4 (430-498)||(45733657-45733725)
chr4 (97-171)||(51002645-51002717)
chr4 (97-171)||(48653758-48653830)
chr4 (135-171)||(375816-375852)
chr4 (135-171)||(7745946-7745982)
[»] chr2 (3 HSPs)
chr2 (97-169)||(38134160-38134230)
chr2 (97-169)||(39769813-39769884)
chr2 (135-171)||(18197463-18197499)
[»] chr8 (2 HSPs)
chr8 (99-212)||(24606863-24606974)
chr8 (43-83)||(34142057-34142097)
[»] chr7 (2 HSPs)
chr7 (97-188)||(49164727-49164816)
chr7 (142-174)||(36066244-36066276)
[»] chr6 (1 HSPs)
chr6 (122-205)||(3359765-3359848)
[»] chr5 (2 HSPs)
chr5 (117-190)||(3193470-3193541)
chr5 (135-169)||(27548502-27548536)
[»] chr1 (2 HSPs)
chr1 (117-211)||(3265391-3265485)
chr1 (43-83)||(1240460-1240500)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 38 - 405
Target Start/End: Complemental strand, 45734114 - 45733745
Alignment:
Q  38 acaagatatacatatatttctttttaaccctctttgattaattctactaannnnnnnnn--agagaaccttatttaagaaagaatcttttgcaaaaaaca 135  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||           ||| |||||||||||||||||||||||||||||||||||    
T  45734114 acaagatatacatatatttctttttaacccactttgattaattctactaatttttttttttagacaaccttatttaagaaagaatcttttgcaaaaaaca 45734015  T
Q  136 aaatgtaagaagaaagacatttgaataattaaaaagacataaacttattgattcgtctatgacaccaaaaaccttaggatccgtactggtttaaaaatat 235  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45734014 aaatgtaagaagaaagacattcgaataattaaaaagacacaaacttgttgattcgtctatgacaccaaaaaccttaggatccgtactggtttaaaaatat 45733915  T
Q  236 taaaaacattttttgggatttgtatatctagaagaaatgagagggttgttaggtagttttcttgtgacttgtgtcccatttcatatagatcnnnnnnngt 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  45733914 taaaaacattttttgggatttgtatatctagaagaaatgagagggttgttaggtagttttcttgtgacttgtgtcccatttcatatagatctctttttgt 45733815  T
Q  336 taattattatttgcaatttgcaatgcatagttgcataccagaggaagaaaacgttaaaaatagaaagttg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45733814 taattattatttgcaatttgcaatgcatagttgcataccagaggaagaaaacgttaaaaatagaaagttg 45733745  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 430 - 498
Target Start/End: Complemental strand, 45733725 - 45733657
Alignment:
Q  430 cagtctacgttaaattattatttttgaaagaagtctacgttaaaatattaaaatctgaactaatatggt 498  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  45733725 cagtctacgttaaattattatttttgaaagaaatctacgttaaaatattaaaatctgaactaacatggt 45733657  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 51002717 - 51002645
Alignment:
Q  97 agagaaccttatttaagaaagaatcttttgcaaaaaacaaaatgtaagaagaaagacatttgaataattaaaaag 171  Q
    ||||||||||||||  ||| ||||||||||| | |||  ||||||||||||||||||||||||||||||||||||    
T  51002717 agagaaccttatttttgaatgaatcttttgcgataaa--aaatgtaagaagaaagacatttgaataattaaaaag 51002645  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 48653758 - 48653830
Alignment:
Q  97 agagaaccttatttaagaaagaatcttttgcaaaaaacaaaatgtaagaagaaagacatttgaataattaaaaag 171  Q
    |||||| |||| ||| ||| ||||||||||||| |||  | ||| ||||||||||||||| ||||||||||||||    
T  48653758 agagaatcttaattatgaatgaatcttttgcaacaaa--acatgcaagaagaaagacattcgaataattaaaaag 48653830  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 375852 - 375816
Alignment:
Q  135 aaaatgtaagaagaaagacatttgaataattaaaaag 171  Q
    |||||||||||||||| |||||| |||||||||||||    
T  375852 aaaatgtaagaagaaatacatttaaataattaaaaag 375816  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 7745982 - 7745946
Alignment:
Q  135 aaaatgtaagaagaaagacatttgaataattaaaaag 171  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  7745982 aaaatgcaagaagaaagatatttgaataattaaaaag 7745946  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 38134160 - 38134230
Alignment:
Q  97 agagaaccttatttaagaaagaatcttttgcaaaaaacaaaatgtaagaagaaagacatttgaataattaaaa 169  Q
    ||||||||||||||| ||| ||||||||||||| |||  ||||||||||| |||||||||||||||| |||||    
T  38134160 agagaaccttatttacgaatgaatcttttgcaacaaa--aaatgtaagaaaaaagacatttgaataactaaaa 38134230  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 39769884 - 39769813
Alignment:
Q  97 agagaaccttatttaagaaagaatcttttgcaaaaaacaaaatgtaagaagaaagacatttgaataattaaaa 169  Q
    ||||||| ||||||| ||  ||||||||| ||| ||| ||||| ||||||||| |||||||||||||||||||    
T  39769884 agagaacattatttatgagcgaatcttttacaacaaa-aaaatataagaagaatgacatttgaataattaaaa 39769813  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 18197463 - 18197499
Alignment:
Q  135 aaaatgtaagaagaaagacatttgaataattaaaaag 171  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  18197463 aaaatgtaagaagaaacacatttgaaaaattaaaaag 18197499  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 24606863 - 24606974
Alignment:
Q  99 agaaccttatttaagaaagaatcttttgcaaaaaacaaaatgtaagaagaaagacatttgaataattaaaaagacataaacttattgattcgtctatgac 198  Q
    ||||| |||||||  || ||||||||||||  |||  |||||||||||||||||||||| ||||| ||||| |||| ||  || |||||||| ||| |||    
T  24606863 agaactttatttataaatgaatcttttgcagcaaa--aaatgtaagaagaaagacatttaaataactaaaaggacacaactttgttgattcgcctaagac 24606960  T
Q  199 accaaaaaccttag 212  Q
    |||||||| |||||    
T  24606961 accaaaaatcttag 24606974  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 34142057 - 34142097
Alignment:
Q  43 atatacatatatttctttttaaccctctttgattaattcta 83  Q
    ||||| |||||||||||||||| || |||||||||||||||    
T  34142057 atatagatatatttctttttaatccgctttgattaattcta 34142097  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 49164816 - 49164727
Alignment:
Q  97 agagaaccttatttaagaaagaatcttttgcaaaaaacaaaatgtaagaagaaagacatttgaataattaaaaagacataaacttattgatt 188  Q
    |||||| |||||||| ||| |||||||||||| || |  ||||| ||||||||||||||||  |||||||||| |||| ||  |||||||||    
T  49164816 agagaatcttatttatgaatgaatcttttgcagaata--aaatgcaagaagaaagacatttacataattaaaatgacacaattttattgatt 49164727  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 36066244 - 36066276
Alignment:
Q  142 aagaagaaagacatttgaataattaaaaagaca 174  Q
    |||||||||||||||||||||| ||||||||||    
T  36066244 aagaagaaagacatttgaataactaaaaagaca 36066276  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 3359765 - 3359848
Alignment:
Q  122 ttttgcaaaaaacaaaatgtaagaagaaagacatttgaataattaaaaagacataaacttattgattcgtctatgacaccaaaa 205  Q
    ||||||| ||||  ||| ||||||||||||  | ||||||||||||||  ||| ||  ||||||||||||||| ||||||||||    
T  3359765 ttttgcagaaaaacaaaggtaagaagaaagttaattgaataattaaaagaacacaactttattgattcgtctaggacaccaaaa 3359848  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 3193541 - 3193470
Alignment:
Q  117 gaatcttttgcaaaaaacaaaatgtaagaagaaagacatttgaataattaaaaagacataaacttattgattcg 190  Q
    ||||||||||||| |||  ||||| |||||||||||||||  ||||||||||| |||||||  ||||| |||||    
T  3193541 gaatcttttgcaataaa--aaatgcaagaagaaagacattcaaataattaaaaggacataattttattaattcg 3193470  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 27548536 - 27548502
Alignment:
Q  135 aaaatgtaagaagaaagacatttgaataattaaaa 169  Q
    ||||| |||||||||||||||||||||||||||||    
T  27548536 aaaatataagaagaaagacatttgaataattaaaa 27548502  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 3265485 - 3265391
Alignment:
Q  117 gaatcttttgcaaaaaacaaaatgtaagaagaaagacatttgaataattaaaaagacata-aac-ttattgattcgtctatgacaccaaaaacctta 211  Q
    ||||||||||||| |||  ||||| | ||||||||||||| |||||||||||| |  ||| ||| ||||||||||||||| ||||| ||||| ||||    
T  3265485 gaatcttttgcaacaaa--aaatgcacgaagaaagacattcgaataattaaaatgtaatacaactttattgattcgtctaagacactaaaaatctta 3265391  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 1240460 - 1240500
Alignment:
Q  43 atatacatatatttctttttaaccctctttgattaattcta 83  Q
    ||||| |||||||||||||||| || |||||||||||||||    
T  1240460 atataaatatatttctttttaatccgctttgattaattcta 1240500  T

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