View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4299_low_1 (Length: 782)

Name: NF4299_low_1
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4299_low_1
NF4299_low_1
[»] chr1 (4 HSPs)
chr1 (57-671)||(10011437-10012040)
chr1 (16-65)||(10011360-10011409)
chr1 (619-667)||(29836243-29836291)
chr1 (619-667)||(40981614-40981662)
[»] chr4 (16 HSPs)
chr4 (670-761)||(26315236-26315327)
chr4 (404-509)||(11215021-11215127)
chr4 (404-509)||(11225532-11225638)
chr4 (621-667)||(14210441-14210487)
chr4 (621-667)||(14211410-14211456)
chr4 (621-667)||(14212361-14212407)
chr4 (621-667)||(14213330-14213376)
chr4 (621-667)||(14214298-14214344)
chr4 (621-667)||(14215267-14215313)
chr4 (621-667)||(14218138-14218184)
chr4 (621-667)||(14219108-14219154)
chr4 (621-667)||(14220077-14220123)
chr4 (621-667)||(14221028-14221074)
chr4 (621-667)||(14221997-14222043)
chr4 (621-667)||(14222966-14223012)
chr4 (629-667)||(37619002-37619040)
[»] chr5 (4 HSPs)
chr5 (616-667)||(4077842-4077893)
chr5 (617-667)||(40946714-40946764)
chr5 (616-666)||(16352147-16352197)
chr5 (631-671)||(33553600-33553640)
[»] chr3 (3 HSPs)
chr3 (619-667)||(29129134-29129182)
chr3 (631-667)||(44712575-44712611)
chr3 (616-667)||(52126889-52126940)
[»] chr7 (4 HSPs)
chr7 (616-667)||(24759478-24759529)
chr7 (619-667)||(1971096-1971144)
chr7 (579-667)||(13761785-13761872)
chr7 (619-664)||(11503211-11503256)
[»] chr8 (2 HSPs)
chr8 (617-667)||(26955416-26955466)
chr8 (616-667)||(38681141-38681192)
[»] chr2 (2 HSPs)
chr2 (590-667)||(4768482-4768559)
chr2 (618-667)||(26449097-26449146)
[»] chr6 (1 HSPs)
chr6 (616-671)||(23073454-23073509)


Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 57 - 671
Target Start/End: Original strand, 10011437 - 10012040
Alignment:
Q  57 ggtgttcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaaggttgatgaaagattctggcggagaacatgcagctatggagatggcatt 156  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  10011437 ggtgatcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaa----------agattctggcggagaacatgcagctatggagatggcatt 10011526  T
Q  157 gaagagttggatggatactgtgttgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaatnnnnnnngttatga 256  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  10011527 gaagagttggatggatactgtgctgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaataaaaaaagttatga 10011626  T
Q  257 tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggtacattattaattgtggtaagaaagca 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10011627 tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggta-attattaattgtggtaagaaagca 10011725  T
Q  357 acgtctgaaggtctatatgtgagccatggagaatataaatggtttttggatgtattgagtgtttactgactcatggttagtaacatccatatataggcat 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10011726 acgtctgaaggtctatatgtgagccatggagaatataaatggtttttggatgtattgattgtttactgactcatggttagtaacatccatatataggcat 10011825  T
Q  457 agagtgcaggcaaatagtgtatctaggtgcatggaaaatataccgaaataaattctgagtgggaaggcttagagttttgtcattccaagacacttcattc 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10011826 agagtgcaggcaaatagtgtatctaggtgcatggaaaatataccgaaataaattctgagtgggaaggcttagagttttgtcattccaagatacttcattc 10011925  T
Q  557 aattaattaaggagggaagagctgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattaggataaacatgtttgctagga 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  10011926 aattaattaaggagggaagagctgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattagggtaagcatgtttgctagga 10012025  T
Q  657 ttagatataaaagat 671  Q
    ||| |||||||||||    
T  10012026 ttaaatataaaagat 10012040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 10011360 - 10011409
Alignment:
Q  16 tagaacaccaccacagagcttggatttggacaacaaagaggggtgttcat 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10011360 tagaacaccaccacagagcttggatttggacaacaaagaggggtgttcat 10011409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 29836291 - 29836243
Alignment:
Q  619 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  29836291 ttagggtttggcaattagggtaaacatgtttgctaggattagatataaa 29836243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 40981614 - 40981662
Alignment:
Q  619 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  40981614 ttagggtttggaaattagggtaagcatgtttgctaggattagatataaa 40981662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 670 - 761
Target Start/End: Original strand, 26315236 - 26315327
Alignment:
Q  670 atcaacagtaaaataatttttcatgttcaaatataaaatagtctcacttcatcactaggcttttgtgaagttccatcccagttctatgaagc 761  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26315236 atcaacagtaaagtaatttttcatattcaaatataaaatagtctcacttcatcactaggcttttgtgaagttccatcccagttctatgaagc 26315327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 509
Target Start/End: Complemental strand, 11215127 - 11215021
Alignment:
Q  404 ggatgtattgagtgtttactgactcatggttagtaacatccatatataggcatagagtgcaggcaaata-gtgtatctaggtgcatggaaaatataccga 502  Q
    |||||| ||||||  ||||||||| ||||||| |||||||| ||||||||||||    ||| ||||| | |||||  ||||||||||||||||||| ||     
T  11215127 ggatgttttgagtaattactgactgatggttattaacatccttatataggcataattagcatgcaaaaacgtgtacataggtgcatggaaaatataacgt 11215028  T
Q  503 aataaat 509  Q
    |||||||    
T  11215027 aataaat 11215021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 509
Target Start/End: Complemental strand, 11225638 - 11225532
Alignment:
Q  404 ggatgtattgagtgtttactgactcatggttagtaacatccatatataggcatagagtgcaggcaaata-gtgtatctaggtgcatggaaaatataccga 502  Q
    |||||| ||||||  ||||||||| ||||||| |||||||| ||||||||||||    ||| ||||| | |||||  ||||||||||||||||||| ||     
T  11225638 ggatgttttgagtaattactgactgatggttattaacatccttatataggcataattagcatgcaaaaacgtgtacataggtgcatggaaaatataacgt 11225539  T
Q  503 aataaat 509  Q
    |||||||    
T  11225538 aataaat 11225532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14210441 - 14210487
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14210441 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14210487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14211410 - 14211456
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14211410 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14211456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14212361 - 14212407
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14212361 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14212407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14213330 - 14213376
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14213330 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14213376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14214298 - 14214344
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14214298 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14214344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14215267 - 14215313
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14215267 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14215313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14218138 - 14218184
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14218138 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14218184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14219108 - 14219154
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14219108 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14219154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14220077 - 14220123
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14220077 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14220123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14221028 - 14221074
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14221028 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14221074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14221997 - 14222043
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14221997 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14222043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 14222966 - 14223012
Alignment:
Q  621 agggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14222966 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14223012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 667
Target Start/End: Original strand, 37619002 - 37619040
Alignment:
Q  629 ggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  37619002 ggaattagggtaagcatgtttgctaggattagatataaa 37619040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 4077893 - 4077842
Alignment:
Q  616 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  4077893 ggattagggtttggcaattaggataagcatgtttgctaggattagatataaa 4077842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 617 - 667
Target Start/End: Complemental strand, 40946764 - 40946714
Alignment:
Q  617 gattagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  40946764 gattagggtttggcaattagggtaaacatgtttgctaggattagatataaa 40946714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 666
Target Start/End: Original strand, 16352147 - 16352197
Alignment:
Q  616 ggattagggttttggaattaggataaacatgtttgctaggattagatataa 666  Q
    |||||||||||| | ||||||| ||| ||||||||||||||||||||||||    
T  16352147 ggattagggtttggcaattagggtaagcatgtttgctaggattagatataa 16352197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 631 - 671
Target Start/End: Complemental strand, 33553640 - 33553600
Alignment:
Q  631 aattaggataaacatgtttgctaggattagatataaaagat 671  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  33553640 aattaggataagcatatttgctaggattagatataaaagat 33553600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 29129182 - 29129134
Alignment:
Q  619 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  29129182 ttagggtttggcaattagggtaaacatgtttgctaggattagatataaa 29129134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 631 - 667
Target Start/End: Original strand, 44712575 - 44712611
Alignment:
Q  631 aattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||||||||||||||||||||||||| |||||||    
T  44712575 aattaggataaacatgtttgctaggattatatataaa 44712611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 52126940 - 52126889
Alignment:
Q  616 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    |||||||||||  | ||||||| ||| |||||||||||||||||||||||||    
T  52126940 ggattagggttaagaaattagggtaagcatgtttgctaggattagatataaa 52126889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 24759529 - 24759478
Alignment:
Q  616 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    |||||||||||  | ||||||| |||||||||||||||||||||||||||||    
T  24759529 ggattagggttaagaaattagggtaaacatgtttgctaggattagatataaa 24759478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 1971144 - 1971096
Alignment:
Q  619 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  1971144 ttagggtttggaaattagggtaagcatgtttgctaggattagatataaa 1971096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 579 - 667
Target Start/End: Complemental strand, 13761872 - 13761785
Alignment:
Q  579 tgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||| ||||| ||||| |||| ||||||||| | |||||||| || || ||||||| |   |||||||||||||||||||||||||    
T  13761872 tgatttctaaattcaaatt-tttgaagccattttttaggattaggtttatgcaattagggtttgcatgtttgctaggattagatataaa 13761785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 664
Target Start/End: Complemental strand, 11503256 - 11503211
Alignment:
Q  619 ttagggttttggaattaggataaacatgtttgctaggattagatat 664  Q
    ||||||||| | |||||||||||| ||||||| |||||||||||||    
T  11503256 ttagggtttcgcaattaggataaatatgtttggtaggattagatat 11503211  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 667
Target Start/End: Complemental strand, 26955466 - 26955416
Alignment:
Q  617 gattagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    ||||||||||| | ||||||| |||||||||||||||| ||||||||||||    
T  26955466 gattagggtttggcaattagggtaaacatgtttgctagaattagatataaa 26955416  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 38681192 - 38681141
Alignment:
Q  616 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    |||||||||||| | || |||| ||| |||||||||||||||||||||||||    
T  38681192 ggattagggtttagcaaatagggtaagcatgtttgctaggattagatataaa 38681141  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 590 - 667
Target Start/End: Complemental strand, 4768559 - 4768482
Alignment:
Q  590 tttaaattatttggagccattttgtt-ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    |||||||| |||||||||||||| || || |||||||||   ||||||||||| ||||||||||| |||||||||||||    
T  4768559 tttaaatt-tttggagccatttttttaggtttagggtttgacaattaggataagcatgtttgctaagattagatataaa 4768482  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 667
Target Start/End: Complemental strand, 26449146 - 26449097
Alignment:
Q  618 attagggttttggaattaggataaacatgtttgctaggattagatataaa 667  Q
    |||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  26449146 attagggtttggcaattagggtaagcatgtttgctaggattagatataaa 26449097  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 671
Target Start/End: Original strand, 23073454 - 23073509
Alignment:
Q  616 ggattagggttttggaattaggataaacatgtttgctaggattagatataaaagat 671  Q
    ||||||||||||   ||||||| ||| ||||||||| |||||||||||||||||||    
T  23073454 ggattagggtttgacaattagggtaagcatgtttgcaaggattagatataaaagat 23073509  T

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