View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4299_low_12 (Length: 466)

Name: NF4299_low_12
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4299_low_12
NF4299_low_12
[»] chr5 (5 HSPs)
chr5 (12-465)||(40181452-40181905)
chr5 (241-302)||(40180938-40180999)
chr5 (154-189)||(38606229-38606264)
chr5 (260-329)||(38606068-38606137)
chr5 (272-329)||(41885617-41885674)
[»] chr8 (7 HSPs)
chr8 (235-421)||(44459244-44459430)
chr8 (235-421)||(44466777-44466963)
chr8 (260-329)||(34502619-34502688)
chr8 (154-185)||(44459145-44459176)
chr8 (154-185)||(44466678-44466709)
chr8 (260-342)||(44459962-44460044)
chr8 (260-342)||(44467495-44467577)
[»] chr1 (1 HSPs)
chr1 (241-391)||(46358821-46358971)


Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Complemental strand, 40181905 - 40181452
Alignment:
Q  12 atcatcatccacacgaagaattcctaaccctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181905 atcatcatccacacgaagaattcctaaccctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgttt 40181806  T
Q  112 acatatcgtgacaacgacgacaacgtcatcaccgcctccaaagatttccagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181805 acatatcgtgacaacgacgacaacgtcatcaccgcctccaaagatttacagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtaca 40181706  T
Q  212 acaaagacttgaccaatctagttcaacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagt 311  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||    
T  40181705 acaaagacttgaccaatctagttcaacatcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaaccctagaagt 40181606  T
Q  312 tccacctcagaatcttatatacttcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181605 tccacctcagaatcttatatacttcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagc 40181506  T
Q  412 actgctgttcactatgattttaatgttaaactaaggaagaaatacatatttttt 465  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40181505 actactgttcactatgatttcaatgttaaactaaggaagaaatacatatttttt 40181452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
Q  241 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac 302  Q
    ||||||||| | ||| || ||||||||||| |||||||||||||||||||||| | ||||||    
T  40180999 catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac 40180938  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 38606264 - 38606229
Alignment:
Q  154 gatttccagaaagtgatgagtcttcttagtaatgct 189  Q
    |||||||| |||||||||||||||||||||||||||    
T  38606264 gatttccataaagtgatgagtcttcttagtaatgct 38606229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 38606137 - 38606068
Alignment:
Q  260 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 329  Q
    ||||||||||| |||||||||||||||| ||||||| | |||||| ||| ||  ||||||| || |||||    
T  38606137 tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat 38606068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 41885617 - 41885674
Alignment:
Q  272 aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 329  Q
    ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| ||||    
T  41885617 aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttat 41885674  T

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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 235 - 421
Target Start/End: Original strand, 44459244 - 44459430
Alignment:
Q  235 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 334  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44459244 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44459343  T
Q  335 tcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 421  Q
    | |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44459344 ttataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44459430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 235 - 421
Target Start/End: Original strand, 44466777 - 44466963
Alignment:
Q  235 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 334  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44466777 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44466876  T
Q  335 tcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 421  Q
    | |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44466877 ttataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44466963  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 34502688 - 34502619
Alignment:
Q  260 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 329  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| ||||||||    
T  34502688 tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttat 34502619  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 185
Target Start/End: Original strand, 44459145 - 44459176
Alignment:
Q  154 gatttccagaaagtgatgagtcttcttagtaa 185  Q
    ||||||||||||||||||||||||||||||||    
T  44459145 gatttccagaaagtgatgagtcttcttagtaa 44459176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 185
Target Start/End: Original strand, 44466678 - 44466709
Alignment:
Q  154 gatttccagaaagtgatgagtcttcttagtaa 185  Q
    ||||||||||||||||||||||||||||||||    
T  44466678 gatttccagaaagtgatgagtcttcttagtaa 44466709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 44459962 - 44460044
Alignment:
Q  260 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 342  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44459962 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44460044  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 44467495 - 44467577
Alignment:
Q  260 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 342  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44467495 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44467577  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 391
Target Start/End: Original strand, 46358821 - 46358971
Alignment:
Q  241 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataa 340  Q
    ||||||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||| ||||    
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  341 agatgctttggaaggataataaggatctcatcgatacccatgttttggaat 391  Q
    || || |||||||| |||| ||||| ||||||  ||||| |||| ||||||    
T  46358921 agttggtttggaagaataacaaggacctcatcactacccctgttctggaat 46358971  T

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