View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_13 (Length: 434)
Name: NF4299_low_13
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 35 - 417
Target Start/End: Original strand, 49415282 - 49415665
Alignment:
| Q |
35 |
aggaaataataaacacattgcatttcaatcaaatccaagatacaagggg-tacatcaatgaaaatatagaaactagtagttaagaataagatatctcttg |
133 |
Q |
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| T |
49415282 |
aggaaataataaacacattgcatttcaatcaaatccaagatacaagggggtacatcaatgaaaatatagaaaatagtagttaagaataaggtatctcttg |
49415381 |
T |
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| Q |
134 |
caagagtatgaactatctcacttgtttgtctctaattaaactcaatccgagagttttcaaaaaataaatgacaacatcgtttatattcataaaaattgct |
233 |
Q |
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| T |
49415382 |
caagagtatgaactatctcacttgtttgtctttaattaaactcaatccgagagttttcaaaaaataagtgacaacatcgtttatattcataaaaattgct |
49415481 |
T |
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| Q |
234 |
ccaaattccaaaatgccattcttaccttcattgtaatgatttactgctctcttgcgtcaagttcaaaatcaaatttaaaagtcgtagatcatgcacaaag |
333 |
Q |
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| T |
49415482 |
ccaaattccaaaatgtcattcttaccttcattgtaatgatttactgctctcttgcgtcaagttcaaaatcaaatttgaaagtcgtagatcatgcacaaag |
49415581 |
T |
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| Q |
334 |
ggtagtgcatgtaaaagtcccaatgctttgccaatgtctcttgggcttattggattagaccataatgttttacttagacgaaac |
417 |
Q |
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| T |
49415582 |
ggtaatgcatgtaaaagtcccaatgctttttcaatgtctcttgggcttattggattagaccataatgttttacttagacgaaac |
49415665 |
T |
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