View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4299_low_15 (Length: 410)

Name: NF4299_low_15
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4299_low_15
NF4299_low_15
[»] chr5 (28 HSPs)
chr5 (9-138)||(32943517-32943646)
chr5 (18-131)||(32944414-32944525)
chr5 (169-272)||(13537926-13538029)
chr5 (151-272)||(20899478-20899599)
chr5 (152-272)||(23495545-23495664)
chr5 (151-235)||(33622373-33622457)
chr5 (153-272)||(36712534-36712652)
chr5 (139-272)||(22510178-22510311)
chr5 (72-142)||(35262448-35262518)
chr5 (287-340)||(23695331-23695384)
chr5 (145-235)||(41037521-41037611)
chr5 (60-137)||(26712358-26712435)
chr5 (60-137)||(26982096-26982173)
chr5 (169-225)||(19329824-19329880)
chr5 (287-363)||(26459266-26459342)
chr5 (302-350)||(34647923-34647971)
chr5 (169-260)||(5931399-5931490)
chr5 (286-364)||(23775289-23775368)
chr5 (286-364)||(23862243-23862322)
chr5 (139-210)||(24095451-24095522)
chr5 (139-225)||(28067894-28067981)
chr5 (191-228)||(5590619-5590656)
chr5 (287-340)||(23690292-23690345)
chr5 (70-138)||(18152670-18152738)
chr5 (72-108)||(25075017-25075053)
chr5 (72-108)||(25132986-25133022)
chr5 (60-131)||(26711575-26711647)
chr5 (60-131)||(26981312-26981384)
[»] chr4 (25 HSPs)
chr4 (9-138)||(33369909-33370038)
chr4 (18-131)||(33370805-33370916)
chr4 (139-270)||(13861512-13861643)
chr4 (139-272)||(25239891-25240024)
chr4 (151-252)||(18284497-18284598)
chr4 (139-235)||(16396136-16396232)
chr4 (139-210)||(8082303-8082374)
chr4 (139-235)||(45313379-45313475)
chr4 (151-225)||(12885523-12885597)
chr4 (191-272)||(17282412-17282493)
chr4 (139-235)||(26780685-26780781)
chr4 (60-111)||(6246811-6246862)
chr4 (139-225)||(10985584-10985670)
chr4 (139-208)||(8168016-8168085)
chr4 (139-235)||(21332414-21332510)
chr4 (152-195)||(15427951-15427994)
chr4 (152-195)||(15434569-15434612)
chr4 (72-111)||(33409419-33409458)
chr4 (302-356)||(6162370-6162424)
chr4 (167-225)||(26778762-26778820)
chr4 (88-138)||(38009284-38009334)
chr4 (70-111)||(23383337-23383378)
chr4 (90-131)||(34154801-34154842)
chr4 (151-235)||(12217788-12217872)
chr4 (60-140)||(22499944-22500024)
[»] chr7 (21 HSPs)
chr7 (9-131)||(32547710-32547832)
chr7 (18-141)||(32548601-32548724)
chr7 (139-272)||(18153325-18153458)
chr7 (139-253)||(47295552-47295666)
chr7 (139-225)||(20093779-20093865)
chr7 (139-253)||(21592745-21592859)
chr7 (139-253)||(30770058-30770172)
chr7 (140-237)||(21801716-21801813)
chr7 (152-225)||(38612801-38612874)
chr7 (152-235)||(22705833-22705915)
chr7 (169-225)||(29165092-29165148)
chr7 (152-235)||(7595587-7595670)
chr7 (139-210)||(9548829-9548900)
chr7 (302-356)||(557855-557909)
chr7 (302-356)||(576038-576092)
chr7 (167-225)||(21802694-21802752)
chr7 (70-111)||(30915761-30915802)
chr7 (70-138)||(30402833-30402901)
chr7 (90-138)||(40258734-40258782)
chr7 (152-228)||(40635520-40635594)
chr7 (72-108)||(46251420-46251456)
[»] chr6 (20 HSPs)
chr6 (276-384)||(31023404-31023512)
chr6 (139-253)||(29094886-29095000)
chr6 (151-273)||(17756899-17757021)
chr6 (139-225)||(23574637-23574723)
chr6 (151-228)||(27964965-27965042)
chr6 (139-235)||(21508508-21508604)
chr6 (139-225)||(15119591-15119676)
chr6 (151-225)||(18729165-18729239)
chr6 (139-225)||(18736244-18736330)
chr6 (140-225)||(18043522-18043607)
chr6 (140-219)||(19857705-19857784)
chr6 (139-241)||(15369493-15369595)
chr6 (89-131)||(25067849-25067891)
chr6 (151-235)||(29482825-29482909)
chr6 (139-225)||(4409440-4409527)
chr6 (169-208)||(18258494-18258533)
chr6 (173-225)||(8306303-8306355)
chr6 (139-241)||(15349497-15349599)
chr6 (70-131)||(18290222-18290283)
chr6 (139-235)||(23524254-23524350)
[»] scaffold0096 (1 HSPs)
scaffold0096 (139-235)||(10742-10838)
[»] chr1 (20 HSPs)
chr1 (152-272)||(49472400-49472519)
chr1 (139-272)||(21815426-21815559)
chr1 (142-235)||(21817605-21817698)
chr1 (140-253)||(19441982-19442095)
chr1 (139-224)||(19967289-19967374)
chr1 (169-234)||(24973787-24973852)
chr1 (70-138)||(29334214-29334282)
chr1 (143-225)||(8995313-8995395)
chr1 (72-138)||(40028764-40028830)
chr1 (139-235)||(9859205-9859301)
chr1 (302-350)||(17721861-17721909)
chr1 (70-138)||(43316357-43316425)
chr1 (71-138)||(38932109-38932176)
chr1 (167-235)||(33029027-33029095)
chr1 (60-111)||(11469108-11469159)
chr1 (72-111)||(31788258-31788297)
chr1 (89-139)||(47334899-47334949)
chr1 (72-109)||(3789320-3789357)
chr1 (83-131)||(2687720-2687768)
chr1 (170-210)||(38622062-38622102)
[»] scaffold0265 (2 HSPs)
scaffold0265 (139-272)||(17250-17383)
scaffold0265 (142-235)||(15111-15204)
[»] chr8 (16 HSPs)
chr8 (143-240)||(33273396-33273493)
chr8 (140-235)||(11709614-11709709)
chr8 (139-223)||(22609364-22609447)
chr8 (138-225)||(32008883-32008970)
chr8 (139-228)||(25820957-25821046)
chr8 (71-141)||(37562292-37562362)
chr8 (139-235)||(7454522-7454618)
chr8 (139-235)||(41280678-41280774)
chr8 (71-138)||(13935034-13935101)
chr8 (169-272)||(18573917-18574020)
chr8 (139-235)||(7999882-7999978)
chr8 (169-253)||(17775835-17775919)
chr8 (169-219)||(10532640-10532690)
chr8 (302-356)||(12756145-12756199)
chr8 (139-208)||(18040358-18040426)
chr8 (70-111)||(40450966-40451007)
[»] chr2 (18 HSPs)
chr2 (139-235)||(27347402-27347498)
chr2 (139-235)||(3770494-3770590)
chr2 (151-235)||(23932913-23932997)
chr2 (151-235)||(25133806-25133890)
chr2 (169-235)||(3105438-3105504)
chr2 (139-208)||(23755688-23755757)
chr2 (72-131)||(34617660-34617719)
chr2 (139-225)||(41266066-41266152)
chr2 (70-131)||(36390964-36391025)
chr2 (75-138)||(36719007-36719070)
chr2 (302-356)||(7909946-7910000)
chr2 (302-356)||(43777113-43777167)
chr2 (139-208)||(19092981-19093050)
chr2 (72-109)||(26021037-26021074)
chr2 (139-200)||(26159097-26159158)
chr2 (302-394)||(26694275-26694368)
chr2 (302-394)||(26702371-26702464)
chr2 (70-138)||(7868121-7868189)
[»] chr3 (9 HSPs)
chr3 (70-138)||(44406939-44407007)
chr3 (71-141)||(51420858-51420928)
chr3 (151-207)||(19790537-19790593)
chr3 (167-235)||(22915284-22915352)
chr3 (286-356)||(13985366-13985436)
chr3 (302-356)||(40802545-40802599)
chr3 (72-109)||(50305649-50305686)
chr3 (84-132)||(35458853-35458901)
chr3 (70-138)||(47481221-47481289)
[»] scaffold0362 (1 HSPs)
scaffold0362 (153-253)||(7233-7333)
[»] scaffold0034 (1 HSPs)
scaffold0034 (140-235)||(56229-56324)
[»] scaffold0026 (1 HSPs)
scaffold0026 (142-225)||(151164-151247)
[»] scaffold0083 (1 HSPs)
scaffold0083 (139-225)||(4066-4152)
[»] scaffold0002 (2 HSPs)
scaffold0002 (139-235)||(391694-391790)
scaffold0002 (169-225)||(381005-381061)
[»] scaffold1272 (1 HSPs)
scaffold1272 (139-235)||(1977-2073)
[»] scaffold0192 (1 HSPs)
scaffold0192 (139-235)||(12554-12650)
[»] scaffold0084 (1 HSPs)
scaffold0084 (139-227)||(54474-54562)
[»] scaffold0008 (2 HSPs)
scaffold0008 (151-235)||(242907-242991)
scaffold0008 (169-224)||(253558-253613)
[»] scaffold0280 (1 HSPs)
scaffold0280 (139-210)||(910-981)
[»] scaffold0483 (1 HSPs)
scaffold0483 (169-235)||(9364-9430)
[»] scaffold0150 (1 HSPs)
scaffold0150 (139-224)||(29927-30012)
[»] scaffold0042 (1 HSPs)
scaffold0042 (151-235)||(68907-68991)
[»] scaffold0063 (1 HSPs)
scaffold0063 (153-235)||(36664-36745)
[»] scaffold0170 (1 HSPs)
scaffold0170 (169-206)||(16216-16253)
[»] scaffold0111 (1 HSPs)
scaffold0111 (143-208)||(2702-2767)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 32943646 - 32943517
Alignment:
Q  9 gagatgaaggtggaagatggtgacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaaaattaactttcctatggtgggaaa 108  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  32943646 gagatgaaggtggaagatggttacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaacattaactttcccatggtgggaaa 32943547  T
Q  109 caaatatcttttcccatgctaaattccacc 138  Q
    |||||||| ||||||||||||||| |||||    
T  32943546 caaatatcctttcccatgctaaatcccacc 32943517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 32944414 - 32944525
Alignment:
Q  18 gtggaagatggtgacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaaaattaactttcctatggtgggaaacaaatatct 117  Q
    ||||||||| |||||||  |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| | |||||||||||||| ||||     
T  32944414 gtggaagatagtgacaa--taatctagtgttgagggtgtatagttctctacttaatctaatggctaacattaacttttccatggtgggaaacaagtatca 32944511  T
Q  118 tttcccatgctaaa 131  Q
    ||||||||||||||    
T  32944512 tttcccatgctaaa 32944525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 272
Target Start/End: Complemental strand, 13538029 - 13537926
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgagggggctgcacgaaacaaaa 268  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||| | | |||| |||||||| || ||| ||| |||    
T  13538029 catttacttaggcccaataccatccaaagcccaaacatcacgtttggcaaaattactcgcgacacaccccttccacgcgaggggggtgtacggaacgaaa 13537930  T
Q  269 gaga 272  Q
    ||||    
T  13537929 gaga 13537926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 151 - 272
Target Start/End: Original strand, 20899478 - 20899599
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgagg 250  Q
    ||||||||||||| | | |||| ||||| ||||| ||||||||||||||||||||||||| |||  |||||||||||| |||||| | | |||| |||||    
T  20899478 ccaaaaggatctttggcccattcacttaagcccagtaccatccaaagcccaaacaccacgtttggaaaaattactcgcgacacaccccttccacgcgagg 20899577  T
Q  251 gggctgcacgaaacaaaagaga 272  Q
    ||| |||||| ||| |||||||    
T  20899578 ggggtgcacggaacgaaagaga 20899599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 23495664 - 23495545
Alignment:
Q  152 caaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgaggg 251  Q
    |||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||||||| ||  ||||||||||||| |||||| | | |||| | ||||    
T  23495664 caaaaggatctttgacccatttacttaggctcaatatcatccaaagcccaaacaccacgttttgcaaaattactcgcgacacaccccttccacgcaaggg 23495565  T
Q  252 ggctgcacgaaacaaaagaga 272  Q
    || |||||| ||| |||||||    
T  23495564 gg-tgcacggaacgaaagaga 23495545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 33622373 - 33622457
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||| || | ||| ||||||||||||| ||||||    
T  33622373 ccaaaaggatctttgacccatttacttaagcccaatacaatccaaagcccaaacatcatgtttggcaaaattactcgcgacacac 33622457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 272
Target Start/End: Original strand, 36712534 - 36712652
Alignment:
Q  153 aaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgagggg 252  Q
    ||||||||||| ||| ||||||||||||||||||||  ||||||||| |||||||||| ||| ||||||||| ||| |||||| | | |||| | |||||    
T  36712534 aaaaggatctttgacccatttacttaggcccaatacactccaaagcctaaacaccacgtttggcaaaattacccgcgacacaccccttccacgctagggg 36712633  T
Q  253 gctgcacgaaacaaaagaga 272  Q
    | |||||| ||| |||||||    
T  36712634 g-tgcacggaacgaaagaga 36712652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 272
Target Start/End: Complemental strand, 22510311 - 22510178
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    |||||||| || ||||||||||||| | | ||||||||||||||||||||  |  ||||  ||||||||||| |||| |||||||| ||| |||||| |     
T  22510311 gttctggaccggccaaaaggatctttggcccatttacttaggcccaatacactataaagttcaaacaccacgtttgataaaattacccgcgacacacccc 22510212  T
Q  239 tcccacacgagggggctgcacgaaacaaaagaga 272  Q
    | |||| ||||| || |||||| ||| |||||||    
T  22510211 ttccacgcgaggtgggtgcacggaacgaaagaga 22510178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 35262518 - 35262448
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccaccgttc 142  Q
    |||||||||  |||| ||||||||| ||||| |||||||| |||| |||||||||||||| ||||||||||    
T  35262518 atctaatggtcaaaaataactttcccatggtaggaaacaattatcctttcccatgctaaactccaccgttc 35262448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 23695384 - 23695331
Alignment:
Q  287 ataaatagtgatgacatgtaacataattgtacatcacaaggtaataatataatc 340  Q
    |||||||||||  |||||||||||||||||||||||||||  ||||||||||||    
T  23695384 ataaatagtgaccacatgtaacataattgtacatcacaagaaaataatataatc 23695331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 41037521 - 41037611
Alignment:
Q  145 gatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||| ||||||||| ||  ||| ||||||||||| | |||||| ||||||||||||||||| ||| ||| |||| ||||| || ||||||    
T  41037521 gatcggccaaaaggacctatgacccatttacttagactcaatacaatccaaagcccaaacactacggttggcaaacttacttgcaacacac 41037611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 26712358 - 26712435
Alignment:
Q  60 gttctctacctgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccac 137  Q
    ||||| ||| |||||| |||| |||||||| |||||| |||||||||||||| |  | |||||||||||||| |||||    
T  26712358 gttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttcccatgctaaactccac 26712435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 26982096 - 26982173
Alignment:
Q  60 gttctctacctgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccac 137  Q
    ||||| ||| |||||| |||| |||||||| |||||| |||||||||||||| |  | |||||||||||||| |||||    
T  26982096 gttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttcccatgctaaactccac 26982173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 19329824 - 19329880
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||||||||||||||| || ||||||||||| |||||| ||| ||| ||||||    
T  19329824 catttacttaggcccaatacaattcaaagcccaaataccacgtttggcaacattact 19329880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 26459342 - 26459266
Alignment:
Q  287 ataaatagtgatgacatgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctccttctct 363  Q
    |||||||| ||| |||||||| |||||||||||  |||||  |||||||||||  |||||||||| |||| ||||||    
T  26459342 ataaatagagatcacatgtaatataattgtacactacaagaaaataatataattctctctcttctctctctttctct 26459266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 34647971 - 34647923
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttc 350  Q
    ||||||| |||||||||||||||||  ||||||| ||||||||||||||    
T  34647971 atgtaacctaattgtacatcacaagagaataatagaatcatctctcttc 34647923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 5931490 - 5931399
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgagggggctgcacg 260  Q
    |||||||||||||||||||| ||||| | |||||||| | || ||| |||||||||| |  |||||| | | |||||| |||||| ||||||    
T  5931490 catttacttaggcccaatacaatccacaacccaaacatcgcgtttggcaaaattacttgtgacacaccccttccacacaaggggggtgcacg 5931399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 23775289 - 23775368
Alignment:
Q  286 tataaatagtgatgacatgtaacataattgtacatcacaaggtaataatataatcatctctc-ttctttctccttctcta 364  Q
    ||||||||| ||| |||||||| |||||||||||||| |||  |||| || |||||||| || |||| ||||||||||||    
T  23775289 tataaatagagatcacatgtaagataattgtacatcagaagagaatattaaaatcatctttctttctctctccttctcta 23775368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 23862243 - 23862322
Alignment:
Q  286 tataaatagtgatgacatgtaacataattgtacatcacaaggtaataatataatcatctctc-ttctttctccttctcta 364  Q
    ||||||||| ||| |||||||| |||||||||||||| |||  |||| || |||||||| || |||| ||||||||||||    
T  23862243 tataaatagagatcacatgtaagataattgtacatcagaagagaatattaaaatcatctttctttctctctccttctcta 23862322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 24095522 - 24095451
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacg 210  Q
    |||||||| || |||||||||  || | | ||| |||||||||||||||| |||||||||||||| ||||||    
T  24095522 gttctggaccggccaaaaggagttttggcccatctacttaggcccaatacaatccaaagcccaaataccacg 24095451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 28067894 - 28067981
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatcc-aaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||| || ||||||||||||| ||| || ||||||| ||||||||| |||| ||||| ||| ||||||| ||| |||| |||||    
T  28067894 gttctggaccggccaaaaggatctttgacccacttacttacgcccaatacaatccaaaagcacaagcaccacgtttggcaaacttact 28067981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 5590619 - 5590656
Alignment:
Q  191 tccaaagcccaaacaccacgattgacaaaattactcgc 228  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  5590619 tccaaagcccaaacaccacgtttggcaaaattactcgc 5590656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 23690345 - 23690292
Alignment:
Q  287 ataaatagtgatgacatgtaacataattgtacatcacaaggtaataatataatc 340  Q
    |||||||| ||  ||||||||||||||||||||||||||   ||||||||||||    
T  23690345 ataaatagagaccacatgtaacataattgtacatcacaacacaataatataatc 23690292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 18152738 - 18152670
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    ||||||||||| ||||||| ||||||  || ||||||||||| ||||  ||||| |||||||| |||||    
T  18152738 tgatctaatgggtaaaatttactttctcatagtgggaaacaactatccattcccgtgctaaatgccacc 18152670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 25075017 - 25075053
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaa 108  Q
    |||||||||||||| |||||||||| |||||||||||    
T  25075017 atctaatggctaaagttaactttcccatggtgggaaa 25075053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 25132986 - 25133022
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaa 108  Q
    |||||||||||||| |||||||||| |||||||||||    
T  25132986 atctaatggctaaagttaactttcccatggtgggaaa 25133022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 26711647 - 26711575
Alignment:
Q  60 gttctctacctgatctaatgg-ctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaa 131  Q
    ||||||||  ||||||| ||| |||||||| ||||||||||| |||||||||| | || |||||||| |||||    
T  26711647 gttctctaattgatctagtggtctaaaatttactttcctatgttgggaaacaactttcctttcccatactaaa 26711575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 26981384 - 26981312
Alignment:
Q  60 gttctctacctgatctaatgg-ctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaa 131  Q
    ||||||||  ||||||| ||| |||||||| ||||||||||| |||||||||| | || |||||||| |||||    
T  26981384 gttctctaattgatctagtggtctaaaatttactttcctatgttgggaaacaactttcctttcccatactaaa 26981312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 33370038 - 33369909
Alignment:
Q  9 gagatgaaggtggaagatggtgacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaaaattaactttcctatggtgggaaa 108  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  33370038 gagatgaaggtggaagatggttacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaacattaactttcccatggtgggaaa 33369939  T
Q  109 caaatatcttttcccatgctaaattccacc 138  Q
    |||||||| ||||||||||||||| |||||    
T  33369938 caaatatcatttcccatgctaaatcccacc 33369909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 33370805 - 33370916
Alignment:
Q  18 gtggaagatggtgacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaaaattaactttcctatggtgggaaacaaatatct 117  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||     
T  33370805 gtggaagatagtgacaa--taatctagtgttgagggtgtataattctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatcc 33370902  T
Q  118 tttcccatgctaaa 131  Q
    ||||||||||||||    
T  33370903 tttcccatgctaaa 33370916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 13861643 - 13861512
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||| |||||| |     
T  13861643 gttctggaccggccaaaaggatctttgactcatttacttaggcccaataccatccaaagcccaaacaccacgtctggtaaaattactcgcgacacacccc 13861544  T
Q  239 tcccacacgagggggctgcacgaaacaaaaga 270  Q
    | |||| |||||||| |||||| ||| |||||    
T  13861543 ttccacgcgaggggggtgcacggaacgaaaga 13861512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 139 - 272
Target Start/End: Complemental strand, 25240024 - 25239891
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacaca-ctc 237  Q
    |||||||| || ||||||||||||| | | ||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||||| ||||| |||    
T  25240024 gttctggaccggccaaaaggatctttggcccatttacttaggcccaatacactccaaagcctaaacaccacgtttgacaaaattactcgcgacacacctc 25239925  T
Q  238 ttcccacacgagggggctgcacgaaacaaaagaga 272  Q
    ||  ||| |||||||| |||||| ||| |||||||    
T  25239924 tt-tcacgcgaggggggtgcacggaacgaaagaga 25239891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 18284497 - 18284598
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgagg 250  Q
    ||||||||||||| | | |||||| |||||||||||||||||||||||||||||| |||| ||| ||||||||||| | |||||| | | |||| |||||    
T  18284497 ccaaaaggatctttggcccatttaattaggcccaataccatccaaagcccaaacatcacgtttggcaaaattactcacgacacaccccttccacgcgagg 18284596  T
Q  251 gg 252  Q
    ||    
T  18284597 gg 18284598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 16396136 - 16396232
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| || ||||||||||||| | | |||||||||||||||||||| |||||||||| |||||||||| ||| |||| ||||| || ||||||    
T  16396136 gttctggaccggccaaaaggatctttggcccatttacttaggcccaatacaatccaaagccaaaacaccacgtttggcaaagttacttgcgacacac 16396232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 8082374 - 8082303
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacg 210  Q
    |||||||| || ||||||||||||| | | |||| ||||||||||||||| |||||||||||||||||||||    
T  8082374 gttctggaccgtccaaaaggatcttaggcccattcacttaggcccaatacaatccaaagcccaaacaccacg 8082303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 45313475 - 45313379
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| || ||||||||| ||| ||| |||||||||||||||||||| || |||||||||| ||||| | ||| ||| |||||| || ||||||    
T  45313475 gttctggaccggccaaaaggaactttgacccatttacttaggcccaatacaattcaaagcccaagcaccatgtttggcaacattacttgcgacacac 45313379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 12885597 - 12885523
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||||  || ||| |||||||||||||||||||| ||||||| ||||||||||||| ||| |||| |||||    
T  12885597 ccaaaaggacttttgacccatttacttaggcccaatacaatccaaaacccaaacaccacgtttggcaaagttact 12885523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 17282412 - 17282493
Alignment:
Q  191 tccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgagggggctgcacgaaacaaaagaga 272  Q
    ||||||||||| |||||||| ||| ||||||||||||| |||||| | | |||| |||||||| |||||| ||| |||||||    
T  17282412 tccaaagcccagacaccacgtttggcaaaattactcgcgacacaccccttccacgcgaggggggtgcacggaacgaaagaga 17282493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 26780685 - 26780781
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| || |||||||||  || | | ||||||| |||||||||||| || |||||||||||||||||| ||| ||| |||||| || ||||||    
T  26780685 gttctggaccggccaaaaggagttttggcccatttacataggcccaatactattcaaagcccaaacaccacgtttggcaacattacttgctacacac 26780781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 6246862 - 6246811
Alignment:
Q  60 gttctctacctgatctaatggctaaaattaactttcctatggtgggaaacaa 111  Q
    ||||||||||| |||||||||  |||||||||||||| ||||||||||||||    
T  6246862 gttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaa 6246811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 10985584 - 10985670
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||| ||  |||||||| ||| | | |||||||||||||||||||| ||||||||  ||||||||||| ||| |||| |||||    
T  10985584 gttctggaccgggcaaaaggacctttggcccatttacttaggcccaatacaatccaaaggtcaaacaccacgtttggcaaagttact 10985670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 8168085 - 8168016
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacacca 208  Q
    |||||| ||||  ||||||||  || ||| |||||||||||| ||||||| |||||||||||||||||||    
T  8168085 gttctgaatcgggcaaaaggagttttgacccatttacttaggtccaatacaatccaaagcccaaacacca 8168016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 21332414 - 21332510
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||| ||||| |||||| |||||| | | |||||||||||| ||||||| || ||||| |||||||| ||| ||| |||| ||||| || ||||||    
T  21332414 gttctagatcggccaaaatgatctttggcccatttacttaggtccaatacaattcaaagtccaaacactacgtttggcaaagttacttgcgacacac 21332510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 15427994 - 15427951
Alignment:
Q  152 caaaaggatcttggactcatttacttaggcccaataccatccaa 195  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||    
T  15427994 caaaaggatcttagacccatttacttaggcccaatacaatccaa 15427951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 15434612 - 15434569
Alignment:
Q  152 caaaaggatcttggactcatttacttaggcccaataccatccaa 195  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||    
T  15434612 caaaaggatcttagacccatttacttaggcccaatacaatccaa 15434569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 33409419 - 33409458
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaacaa 111  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  33409419 atctaatggataaaatttactttcctatggtgggaaacaa 33409458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Original strand, 6162370 - 6162424
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctc 356  Q
    ||||||| ||||| |||||||||||  |||||||||||||||| |||||| ||||    
T  6162370 atgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 6162424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 26778762 - 26778820
Alignment:
Q  167 ctcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    ||||||||||||||| |||||| || |||||| ||||||||| | ||||||| ||||||    
T  26778762 ctcatttacttaggctcaatactattcaaagctcaaacaccatgtttgacaacattact 26778820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 38009334 - 38009284
Alignment:
Q  88 taactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    ||||||| | |||||||||||||| |||| ||||||||||||||| |||||    
T  38009334 taacttttccatggtgggaaacaattatcctttcccatgctaaatcccacc 38009284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 23383378 - 23383337
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaa 111  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||    
T  23383378 tgatcgaatggataaaattaactttcccatggtgggaaacaa 23383337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 34154842 - 34154801
Alignment:
Q  90 actttcctatggtgggaaacaaatatcttttcccatgctaaa 131  Q
    ||||||| |||||||||||||| | |||||||||||||||||    
T  34154842 actttcccatggtgggaaacaagtttcttttcccatgctaaa 34154801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 12217872 - 12217788
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||| ||| | | ||||||||||| || ||||| ||||| |||||||||||| || ||  |||||||||| || ||||||    
T  12217872 ccaaaaggacctttggcccatttacttagtcctaatacaatccacagcccaaacaccgcgtttagcaaaattacttgcaacacac 12217788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 22499944 - 22500024
Alignment:
Q  60 gttctctacctgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccaccgt 140  Q
    ||||||||  ||||| ||||| | ||| ||||||||||||||||| |||||| | || ||||||||| |||| || |||||    
T  22499944 gttctctatttgatccaatggtttaaaataactttcctatggtggaaaacaattctcctttcccatgttaaactctaccgt 22500024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 32547832 - 32547710
Alignment:
Q  9 gagatgaaggtggaagatggtgacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaaaattaactttcctatggtgggaaa 108  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||| |||    
T  32547832 gagatgaaggtggaagatgatgacaaaataatctagtgttgagggtctatagttctctatttgatctaatggctaacattaactttcctatggtggaaaa 32547733  T
Q  109 caaatatcttttcccatgctaaa 131  Q
    |||  ||| ||||||||||||||    
T  32547732 caagaatcctttcccatgctaaa 32547710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 32548601 - 32548724
Alignment:
Q  18 gtggaagatggtgacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaaaattaactttcctatggtgggaaacaaatatct 117  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||     
T  32548601 gtggaagatagtgacaaaataatataatgttgagggtgtatagttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatca 32548700  T
Q  118 tttcccatgctaaattccaccgtt 141  Q
    |||||||| |||||  ||||||||    
T  32548701 tttcccatactaaaccccaccgtt 32548724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 139 - 272
Target Start/End: Complemental strand, 18153458 - 18153325
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    |||||||| || ||||||||||||| | | ||||||||||||||||||||  | |||||||||||||||| | ||| ||||||||||||| |||||| |     
T  18153458 gttctggaccggccaaaaggatctttggcccatttacttaggcccaatacactacaaagcccaaacaccatgtttggcaaaattactcgcgacacacccc 18153359  T
Q  239 tcccacacgagggggctgcacgaaacaaaagaga 272  Q
    | |||| |||||||| |||||| |||||||||||    
T  18153358 ttccacgcgaggggggtgcacggaacaaaagaga 18153325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 47295552 - 47295666
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    ||||| ||| ||||||||||||||| ||| |||||||||||| |||||||  | |||||||||||||||||| |||  |||||||||||| |||||| |     
T  47295552 gttcttgattgaccaaaaggatctttgacccatttacttaggtccaatacactacaaagcccaaacaccacgtttggaaaaattactcgcgacacaccca 47295651  T
Q  239 tcccacacgaggggg 253  Q
    | |||| ||||||||    
T  47295652 ttccacgcgaggggg 47295666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 20093865 - 20093779
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||| |||| ||||||||||||| ||| |||||||||||| ||||||| |||||||| |||||||||||| ||| |||| |||||    
T  20093865 gttctgaatcggccaaaaggatctttgacccatttacttaggtccaatacaatccaaagtccaaacaccacgtttgtcaaagttact 20093779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 21592745 - 21592859
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    |||||||| || ||||||| ||||| | | |||| |||||||||||||||||||||||| |||||||||| | ||| | ||||||||||| |||||| |     
T  21592745 gttctggaccggccaaaagaatctttggcccattcacttaggcccaataccatccaaagtccaaacaccatgtttggctaaattactcgcgacacacccc 21592844  T
Q  239 tcccacacgaggggg 253  Q
    | |||| ||||||||    
T  21592845 ttccacgcgaggggg 21592859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 30770058 - 30770172
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    |||||||| || ||||||||| ||| ||  |||||||||||||||||||| || ||||||||||||| |||| ||||| || ||||| || |||||| |     
T  30770058 gttctggaccggccaaaaggacctttgaaccatttacttaggcccaatacaattcaaagcccaaacatcacgtttgacgaagttacttgcgacacacccc 30770157  T
Q  239 tcccacacgaggggg 253  Q
    | |||||| ||||||    
T  30770158 ttccacacaaggggg 30770172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 21801716 - 21801813
Alignment:
Q  140 ttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactc 237  Q
    ||||||| || ||||||||||||| | | |||||||||||||||||||| ||| ||| ||||||||||||| |||  ||| ||||| || ||||||||    
T  21801716 ttctggaccggccaaaaggatctttggcccatttacttaggcccaatactatctaaaacccaaacaccacgtttggaaaacttacttgcaacacactc 21801813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 38612874 - 38612801
Alignment:
Q  152 caaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||| ||| ||| ||||||||||||| |||||| || |||||||||||||||||| ||| ||| ||||||    
T  38612874 caaaaggagctttgacccatttacttaggctcaatactattcaaagcccaaacaccacgtttggcaacattact 38612801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 22705915 - 22705833
Alignment:
Q  152 caaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||  || ||| |||||||||||||||||||| |||||||| || ||||||||| |||||||| ||||| || ||||||    
T  22705915 caaaaggacatttgacccatttacttaggcccaatacaatccaaagtcc-aacaccacgtttgacaaagttacttgcaacacac 22705833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 29165148 - 29165092
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||| ||||||||||||| | ||||||||||||||||||| ||| |||| |||||    
T  29165148 catttatttaggcccaatacaacccaaagcccaaacaccacgtttggcaaagttact 29165092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 7595670 - 7595587
Alignment:
Q  152 caaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||||||| | | |||||||| ||||||||||| || ||||||  |||||||||| ||| |||| ||||| || ||||||    
T  7595670 caaaaggatctttggcccatttactcaggcccaatacaattcaaagcttaaacaccacgcttggcaaacttacttgcaacacac 7595587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 9548829 - 9548900
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacg 210  Q
    |||||||| || |||||||||| || | | ||||||| ||| |||||||| ||||||||||||||| |||||    
T  9548829 gttctggaccggccaaaaggatgtttggcccatttacgtagtcccaatacaatccaaagcccaaacgccacg 9548900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 557909 - 557855
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctc 356  Q
    ||||||| |||||||||||||||||  |||||||||||| ||| |||||| ||||    
T  557909 atgtaacctaattgtacatcacaagagaataatataatcctctttcttctctctc 557855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 576092 - 576038
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctc 356  Q
    ||||||| |||||||||||||||||  |||||||||||| ||| |||||| ||||    
T  576092 atgtaacctaattgtacatcacaagagaataatataatcctctttcttctctctc 576038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 21802752 - 21802694
Alignment:
Q  167 ctcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||||||||||| ||||| ||| ||||| ||||||||||| ||| |||| |||||    
T  21802752 ctcatttacttaggccgaatacaatctaaagctcaaacaccacgtttgtcaaagttact 21802694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 30915802 - 30915761
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaa 111  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||    
T  30915802 tgatctaatgggtaaaatttactttcccatggtgggaaacaa 30915761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 30402833 - 30402901
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    ||||||||||| ||||||| ||||||| ||||||| ||| || ||||  ||| |||||||||| |||||    
T  30402833 tgatctaatgggtaaaatttactttcccatggtggaaaataactatccattctcatgctaaatgccacc 30402901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 40258734 - 40258782
Alignment:
Q  90 actttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    ||||||| |||||| ||||||| |||| |||||||||||||| ||||||    
T  40258734 actttcccatggtgagaaacaattatcatttcccatgctaaactccacc 40258782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 40635520 - 40635594
Alignment:
Q  152 caaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgc 228  Q
    |||||||||||| | | |||| |||||| ||||||| ||||||||| | |||||||||| ||| |||||||||||||    
T  40635520 caaaaggatctttgcc-cattcacttagacccaatatcatccaaagtc-aaacaccacgtttggcaaaattactcgc 40635594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 46251456 - 46251420
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaa 108  Q
    |||||||||||||||| |||||||| |||||||||||    
T  46251456 atctaatggctaaaatcaactttcccatggtgggaaa 46251420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 384
Target Start/End: Original strand, 31023404 - 31023512
Alignment:
Q  276 tgtagttcgatataaatagtgatgacatgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctccttctctactcttgttctt 375  Q
    |||||||| |||||||||| ||| |||||||||||||||||| |||||| |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  31023404 tgtagttctatataaatagagatcacatgtaacataattgtatatcacatgaaaataatataatcatctctcttctttctccttctctactcttgttctt 31023503  T
Q  376 attttaata 384  Q
    ||| |||||    
T  31023504 attctaata 31023512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 29094886 - 29095000
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    |||||||| ||||||||| |||||| | | |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |     
T  29094886 gttctggaccgaccaaaaagatctttggcccattcacttaggcccaataccatccaaagcccaaacaccacgtttggcaaaattactcgcgacacacccc 29094985  T
Q  239 tcccacacgaggggg 253  Q
    | |||| ||||||||    
T  29094986 ttccacgcgaggggg 29095000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 151 - 273
Target Start/End: Original strand, 17756899 - 17757021
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgagg 250  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||| ||||||||||||||||| ||| ||||||||||||| |||||| | | |||| |||||    
T  17756899 ccaaaaggatctttgacacatttacttaggcctaatacaatcgaaagcccaaacaccacgtttggcaaaattactcgcgacacaccccttccacgcgagg 17756998  T
Q  251 gggctgcacgaaacaaaagagat 273  Q
    ||| |||||| ||| ||| ||||    
T  17756999 ggggtgcacggaacgaaaaagat 17757021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 23574723 - 23574637
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||| || ||||||||| ||| | | |||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||    
T  23574723 gttctggaccgcccaaaaggacctttggcccatttacttaggcccaatacaatccaaagcccaaacaccacgtttgacaaagttact 23574637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 27965042 - 27964965
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgc 228  Q
    ||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||| |||  ||||||||||||    
T  27965042 ccaaaaggatctttggcccatttacttaggcccaatatcatccaaagcccaaacaccacgtttggtaaaattactcgc 27964965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 21508508 - 21508604
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||||| ||||| ||| ||| | | |||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  21508508 gttctggatcggccaaagggacctttggcccatttacttaggcccaatacaatccaaagctcaaacaccacgtttgacaaagttacttgcaacacac 21508604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 15119591 - 15119676
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||| || ||||||||| ||||| | |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||||    
T  15119591 gttctggaccggccaaaaggaccttggcc-catttacttaggcccaatacaatccagagcccaaacaccacgtttgacaaagttact 15119676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 18729239 - 18729165
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    ||||||||||||| | | |||||||||||||| ||||| ||||||| ||||||||||||| |||||||| |||||    
T  18729239 ccaaaaggatctttggcccatttacttaggcctaatactatccaaaacccaaacaccacgtttgacaaacttact 18729165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 18736330 - 18736244
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||| || |||||||||| || | | |||||||||||||||||||  ||||||||||||||||||||| ||| |||| |||||    
T  18736330 gttctggaccggccaaaaggatttttggcccatttacttaggcccaataatatccaaagcccaaacaccacgtttggcaaacttact 18736244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 18043607 - 18043522
Alignment:
Q  140 ttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    ||||||| || ||||||||| ||| | | ||||||||||||||||||||||| ||||||||||||| |||| ||| |||| |||||    
T  18043607 ttctggaccggccaaaaggacctttggcccatttacttaggcccaataccattcaaagcccaaacatcacgtttggcaaagttact 18043522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 19857705 - 19857784
Alignment:
Q  140 ttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaa 219  Q
    ||||||| |||||||||||| ||| | | ||||||||||||| |||||| ||||||||| ||||||||||| ||| ||||    
T  19857705 ttctggaccgaccaaaaggacctttggcgcatttacttaggctcaatacaatccaaagctcaaacaccacgtttggcaaa 19857784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 15369493 - 15369595
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    |||||||| || ||||||||||||| | | |||||||||| ||||||||  ||||||||| ||||||||||| ||| ||| ||| || || |||||| ||    
T  15369493 gttctggaccggccaaaaggatcttaggcgcatttacttaagcccaatataatccaaagctcaaacaccacgtttggcaatattccttgcaacacaccct 15369592  T
Q  239 tcc 241  Q
    |||    
T  15369593 tcc 15369595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 25067849 - 25067891
Alignment:
Q  89 aactttcctatggtgggaaacaaatatcttttcccatgctaaa 131  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  25067849 aactttcctatggtgggaaacaaatatcctttcccatgctaaa 25067891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 29482909 - 29482825
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||||||| | | |||||||| |||||||| || ||||||||||||||| ||||| ||| ||| |||||| || ||||||    
T  29482909 ccaaaaggatctttggcccatttactcaggcccaacacaatccaaagcccaaacgccacgtttggcaacattacttgcgacacac 29482825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 4409527 - 4409440
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagccc-aaacaccacgattgacaaaattact 225  Q
    ||||| ||||| |||||||||  || | | ||||||||||||||||||| ||| |||||||| |||||||||| |||||||| |||||    
T  4409527 gttctcgatcggccaaaaggacatttggcccatttacttaggcccaatatcattcaaagcccaaaacaccacgtttgacaaagttact 4409440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 18258494 - 18258533
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacacca 208  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  18258494 catttacttaggcccaatacaatccaaagcccaaacacca 18258533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 8306355 - 8306303
Alignment:
Q  173 tacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||||||||||| ||| |||||||||||| |||| |||||||| |||||    
T  8306355 tacttaggcccaatacgatctaaagcccaaacatcacgtttgacaaagttact 8306303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 15349497 - 15349599
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    |||||||| ||  |||||||||||| | | | ||||||||||||| |||| ||||||||  ||||||||| | ||| ||| |||||| || |||||| ||    
T  15349497 gttctggaccggtcaaaaggatcttaggcccgtttacttaggcccgatacaatccaaagatcaaacaccatgtttggcaatattacttgcaacacaccct 15349596  T
Q  239 tcc 241  Q
    |||    
T  15349597 tcc 15349599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 18290283 - 18290222
Alignment:
Q  70 tgatctaatggctaaaa-ttaactttcctatggtgggaaacaaatatcttttcccatgctaaa 131  Q
    ||||||||||| ||||| |||||||||| ||||||||||| || || ||||||||||||||||    
T  18290283 tgatctaatggttaaaaattaactttcccatggtgggaaa-aattagcttttcccatgctaaa 18290222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 23524350 - 23524254
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| || ||||| ||| ||| | | ||||||||||||  |||||| | ||||||||||||||||||| ||  |||| ||||| || ||||||    
T  23524350 gttctggaccggccaaagggacctttggcccatttacttaggtacaatacaacccaaagcccaaacaccacgttttgcaaagttacttgcgacacac 23524254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 10742 - 10838
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||||| ||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  10742 gttctggatcggccaaaaggatctttggcccattcacttaggcccaataccatccaaagcccaaacaccacgtttggcaaaattactcgcgacacac 10838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 49472519 - 49472400
Alignment:
Q  152 caaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgaggg 251  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| | |||| | |||||| ||||||    
T  49472519 caaaaggatctttgacccatttacttaggcccaataccatccaaagtccaaacaccgcgtttgacaaaattactcgcgaaacacccctcccacgcgaggg 49472420  T
Q  252 ggctgcacgaaacaaaagaga 272  Q
    || |||||| ||| |||||||    
T  49472419 gg-tgcacggaacgaaagaga 49472400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 272
Target Start/End: Original strand, 21815426 - 21815559
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    |||||||| || ||||||| ||||| | | |||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||  |||||| |     
T  21815426 gttctggaccggccaaaagaatctttggcccattcacttaggcccagtaccatccaaatcccaaacaccacgtttggcaaaattactcgtgacacacccc 21815525  T
Q  239 tcccacacgagggggctgcacgaaacaaaagaga 272  Q
    | |||| |||||||| |||||| ||| |||||||    
T  21815526 ttccacgcgaggggggtgcacggaacgaaagaga 21815559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 21817605 - 21817698
Alignment:
Q  142 ctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||| || ||||||||||||| | | |||| ||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  21817605 ctggaccggccaaaaggatctttggcccattcacttaggcccagtactatccaaagcccaaacaccacgtttggcaaaattactcgcgacacac 21817698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 253
Target Start/End: Original strand, 19441982 - 19442095
Alignment:
Q  140 ttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactctt 239  Q
    ||||||| || ||||||||| ||| | | |||||||||||||||||||| ||||||| | ||||||||||| ||| |||| ||||| || |||||| | |    
T  19441982 ttctggaccggccaaaaggacctttggcccatttacttaggcccaatacaatccaaaactcaaacaccacgtttggcaaagttacttgcgacacacccct 19442081  T
Q  240 cccacacgaggggg 253  Q
     |||||| ||||||    
T  19442082 tccacacaaggggg 19442095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 19967289 - 19967374
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattac 224  Q
    |||||||| ||  |||||||| ||| ||  |||||||||||||||||||| |||||||| |||||||||||| |||||||| ||||    
T  19967289 gttctggaccggtcaaaaggacctttgatccatttacttaggcccaatacgatccaaagtccaaacaccacgtttgacaaagttac 19967374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 24973787 - 24973852
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacaca 234  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||  |||||||||| || |||||    
T  24973787 catttacttaggcccaatatcatccaaagcccaaacaccacgttttgcaaaattacttgcgacaca 24973852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 29334282 - 29334214
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    ||||||||||| ||||||| ||||||| |||||||||||||| ||||  |||||||||||||| |||||    
T  29334282 tgatctaatgggtaaaatttactttcccatggtgggaaacaactatccattcccatgctaaatgccacc 29334214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 8995313 - 8995395
Alignment:
Q  143 tggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||| |||||||||||| ||| | | ||||||||||| |||||||| ||| |||||| |||||||||| ||||||| ||||||    
T  8995313 tggaccgaccaaaaggacctttggcccatttacttagacccaatactatctaaagcctaaacaccacgtttgacaacattact 8995395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 40028764 - 40028830
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||  ||| |||||||||| |||||    
T  40028764 atctaatggataaaatttactttcctatggtgggaaacaactatccattctcatgctaaatgccacc 40028830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 9859301 - 9859205
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| || ||||||||||||| |||| ||| |||||| || ||||| |||||||  |||||||||||| ||| |||| ||||| || ||||||    
T  9859301 gttctggaccggccaaaaggatctttgacttattgacttagacctaatacaatccaaaatccaaacaccacgtttggcaaacttacttgcaacacac 9859205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 17721861 - 17721909
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttc 350  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  17721861 atgtaacctaattgtacatcacaagagaataatataatcatctctcttc 17721909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 43316425 - 43316357
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    ||||| ||||| ||||||| ||||||| |||||||||||||| ||||  |||||||||||||| |||||    
T  43316425 tgatcaaatggataaaatttactttcccatggtgggaaacaactatccattcccatgctaaatgccacc 43316357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 38932109 - 38932176
Alignment:
Q  71 gatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    |||||||||| ||||| | ||||||||||||||| |||||| |  ||||||||||||||||| |||||    
T  38932109 gatctaatggttaaaaatgactttcctatggtggaaaacaacttccttttcccatgctaaatgccacc 38932176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 33029095 - 33029027
Alignment:
Q  167 ctcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||| |||||||||| |||||  ||||||||||||||||||||| ||||| | |||||| || ||||||    
T  33029095 ctcaattacttaggcacaatataatccaaagcccaaacaccacgtttgactatattacttgcgacacac 33029027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 11469159 - 11469108
Alignment:
Q  60 gttctctacctgatctaatggctaaaattaactttcctatggtgggaaacaa 111  Q
    ||||||||||| |||||||||  ||||||| |||||| ||||||||||||||    
T  11469159 gttctctaccttatctaatggtcaaaattagctttcccatggtgggaaacaa 11469108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 31788258 - 31788297
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaacaa 111  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  31788258 atctaatggttaaaattaactttcccatggtgggaaacaa 31788297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 47334899 - 47334949
Alignment:
Q  89 aactttcctatggtgggaaacaaatatcttttcccatgctaaattccaccg 139  Q
    ||||||||||||||||||||||| |  |||||||||| |||||| ||||||    
T  47334899 aactttcctatggtgggaaacaactcccttttcccatactaaatgccaccg 47334949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 3789320 - 3789357
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaac 109  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  3789320 atctaatggctaaaatcaactttcctatggtaggaaac 3789357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 2687720 - 2687768
Alignment:
Q  83 aaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaa 131  Q
    |||| ||| ||||| |||||||||||||| |||| ||||||||||||||    
T  2687720 aaaaataattttcccatggtgggaaacaattatcctttcccatgctaaa 2687768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 38622102 - 38622062
Alignment:
Q  170 atttacttaggcccaataccatccaaagcccaaacaccacg 210  Q
    ||||||||||||||||||| ||||||||| |||||| ||||    
T  38622102 atttacttaggcccaatacaatccaaagctcaaacatcacg 38622062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 272
Target Start/End: Complemental strand, 17383 - 17250
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactct 238  Q
    |||||||| || ||||||| ||||| | | |||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||  |||||| |     
T  17383 gttctggaccggccaaaagaatctttggcccattcacttaggcccagtaccatccaaatcccaaacaccacgtttggcaaaattactcgtgacacacccc 17284  T
Q  239 tcccacacgagggggctgcacgaaacaaaagaga 272  Q
    | |||| |||||||| |||||| ||| |||||||    
T  17283 ttccacgcgaggggggtgcacggaacgaaagaga 17250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 15204 - 15111
Alignment:
Q  142 ctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||| || ||||||||||||| | | |||| ||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  15204 ctggaccggccaaaaggatctttggcccattcacttaggcccagtactatccaaagcccaaacaccacgtttggcaaaattactcgcgacacac 15111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 33273396 - 33273493
Alignment:
Q  143 tggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttc 240  Q
    |||| |||||||||||||||| | | |||||||||||||| ||||| ||||||||||||||||||||| ||| |||| ||||| || |||||||||||    
T  33273396 tggaccgaccaaaaggatctttggcccatttacttaggcctaatactatccaaagcccaaacaccacgtttggcaaatttacttgcaacacactcttc 33273493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 11709709 - 11709614
Alignment:
Q  140 ttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||| || ||||||||||||| | | |||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||| || ||||||    
T  11709709 ttctggaccggccaaaaggatctttggcccatttacttaggcccaatacaatccaaagcccaaataccacgtttgacaatattacttgcgacacac 11709614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 22609364 - 22609447
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaatta 223  Q
    |||||||| |||||||||||||||| ||  ||||||||||||||||||| |||||||||||||||||||| | ||||||| ||||    
T  22609364 gttctggaccgaccaaaaggatctttgatccatttacttaggcccaata-catccaaagcccaaacaccatgtttgacaacatta 22609447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 32008883 - 32008970
Alignment:
Q  138 cgttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    ||||||||| || ||||||||| ||| ||| ||| |||||||||||||||| ||| ||||||||||||||||| |||||||| |||||    
T  32008883 cgttctggaccggccaaaaggacctttgacccatatacttaggcccaatacaatcgaaagcccaaacaccacgtttgacaaagttact 32008970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 25821046 - 25820957
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgc 228  Q
    |||||||| || ||||||||||||| | |  ||||| || |||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  25821046 gttctggaccggccaaaaggatctttggccaatttatttgggccgaataccatccaaagcccaaacaccacgtttggcaaaattactcgc 25820957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 37562362 - 37562292
Alignment:
Q  71 gatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccaccgtt 141  Q
    |||||||||| ||||||| |||||||||||||||||||||| | || ||||||||||||||  ||||||||    
T  37562362 gatctaatggttaaaattgactttcctatggtgggaaacaattctcctttcccatgctaaaccccaccgtt 37562292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 7454522 - 7454618
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| || ||||||||||||| | |  |||||||||||||||| || ||||||||||||||| ||||| ||| |||| ||||| || ||||||    
T  7454522 gttctggaccggccaaaaggatctttggcctatttacttaggcccaacacaatccaaagcccaaactccacgtttggcaaacttacttgcaacacac 7454618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 41280678 - 41280774
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| ||  |||||||| ||| ||| ||||||||||||||||| || ||||||||||||||||||| | ||| ||| |||||| || ||||||    
T  41280678 gttctggaccggacaaaaggacctttgacccatttacttaggcccaacacaatccaaagcccaaacaccatgtttggcaacattacttgcgacacac 41280774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 13935034 - 13935101
Alignment:
Q  71 gatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    |||||||||| ||||| | ||||||||||||||| |||||| | || ||||||||||||||| |||||    
T  13935034 gatctaatggttaaaagtgactttcctatggtggaaaacaactttcctttcccatgctaaatgccacc 13935101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 18573917 - 18574020
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgagggggctgcacgaaacaaaa 268  Q
    |||||||||||||| ||||| || |||||||||||||||||| ||| |||| ||||| || |||||  | | |||||| |||||| |||| | | |||||    
T  18573917 catttacttaggcctaatacaatgcaaagcccaaacaccacgtttggcaaagttacttgcgacacatcccttccacacaaggggggtgcatggagcaaaa 18574016  T
Q  269 gaga 272  Q
    ||||    
T  18574017 gaga 18574020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 7999978 - 7999882
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| || |||||||||  || | | |||||||||||||||||||| ||||| | ||| |||||| || ||| |||||||||| || ||||||    
T  7999978 gttctggaccggccaaaaggacatttggcccatttacttaggcccaatacaatccacaacccgaacaccgcgtttggcaaaattacttgcgacacac 7999882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 17775919 - 17775835
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgaggggg 253  Q
    ||||||| |||| ||||||| |||||||||||||||| |||| ||| |||| ||||| || |||||| | | |||||| ||||||    
T  17775919 catttacctaggtccaatacaatccaaagcccaaacatcacgtttggcaaagttacttgcgacacaccccttccacacaaggggg 17775835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 10532640 - 10532690
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaa 219  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| ||| ||||    
T  10532640 catttacttaggcccaataccattcaaagctcaaacgccacgtttggcaaa 10532690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 12756199 - 12756145
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctc 356  Q
    ||||||| ||||| |||||||||||  |||||||||||||||| |||||| ||||    
T  12756199 atgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 12756145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 18040358 - 18040426
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacacca 208  Q
    |||||||| || ||||||||| ||| | | |||||||||||| ||||||  |||||||||||||||||||    
T  18040358 gttctggaccggccaaaaggacctttggcccatttacttagg-ccaatataatccaaagcccaaacacca 18040426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 40450966 - 40451007
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaa 111  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||    
T  40450966 tgatctaatggttaaaatttactttcccatggtgggaaacaa 40451007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 27347498 - 27347402
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| ||  |||||||||||| | | |||||||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||    
T  27347498 gttctggaccggtcaaaaggatctttggcccatttacttaagcccaataccatccaaagcccaaacatcacgtttggcaaaattactcgcgacacac 27347402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 3770590 - 3770494
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| || ||||||||| ||| | | |||||||||||||||||||| || |||||||||||||||||| ||| |||| ||||| || ||||||    
T  3770590 gttctggaccggccaaaaggacctttggcccatttacttaggcccaatacaattcaaagcccaaacaccacgtttggcaaagttacttgcaacacac 3770494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 23932997 - 23932913
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||||||| | | |||||||||||||| ||||| |||||||||||||||||||||  |||||| |||||| || ||||||    
T  23932997 ccaaaaggatctttggcccatttacttaggcctaatacaatccaaagcccaaacaccacgtctgacaacattacttgcgacacac 23932913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 25133806 - 25133890
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||| |||||| ||| |||||||||||||||| ||| ||||||||||||||||||||| ||| |||| ||||| || ||||||    
T  25133806 ccaaaaagatctttgacccatttacttaggcccattacaatccaaagcccaaacaccacgtttggcaaagttacttgcgacacac 25133890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 3105504 - 3105438
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||||| |||||| || ||||||    
T  3105504 catttacttaggcccaacacaatccaaagcccaaacaccacgtttgacaacattacttgcgacacac 3105438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 23755688 - 23755757
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacacca 208  Q
    |||||||| || ||||||||| ||| | | ||||||| |||||||||||| |||||||||||||||||||    
T  23755688 gttctggaccggccaaaaggacctttggcccatttacctaggcccaatacaatccaaagcccaaacacca 23755757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 34617719 - 34617660
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaa 131  Q
    |||||||||  |||| ||||||||| |||||||||||||| |||| ||||||||||||||    
T  34617719 atctaatggtcaaaaataactttcccatggtgggaaacaattatcctttcccatgctaaa 34617660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 41266066 - 41266152
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||| ||  ||||||||| || ||| |||||||||||||||||||| |||||||  |||||||||| | ||| |||| |||||    
T  41266066 gttctggaccggtcaaaaggattttagacccatttacttaggcccaatacgatccaaaatccaaacaccatgtttggcaaagttact 41266152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 36391025 - 36390964
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaa 131  Q
    ||||||||||| ||||||| ||||||| |||||||||||||| |  | ||||||||||||||    
T  36391025 tgatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatgctaaa 36390964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 36719007 - 36719070
Alignment:
Q  75 taatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    |||||| |||||||| |||||||||||| |||||||| | || |||||||| |||||| |||||    
T  36719007 taatggttaaaattagctttcctatggtaggaaacaagtttcctttcccatactaaatgccacc 36719070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 7910000 - 7909946
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctc 356  Q
    ||||||| ||||| |||||||||||  |||||||||||||||| |||||| ||||    
T  7910000 atgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 7909946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Original strand, 43777113 - 43777167
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctc 356  Q
    ||||||| ||||| |||||||||||  |||||||||||||||| |||||| ||||    
T  43777113 atgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 43777167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 19093050 - 19092981
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacacca 208  Q
    |||||||||||  ||||||||  || ||  |||||||||||||||||||  || ||||||||||||||||    
T  19093050 gttctggatcggacaaaaggagatttgatccatttacttaggcccaatattattcaaagcccaaacacca 19092981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 26021074 - 26021037
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaac 109  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  26021074 atctaatggctaaaatcaactttcctatggtaggaaac 26021037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 26159097 - 26159158
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagccc 200  Q
    |||||||| || |||||||||  || | |||||||||||||||||||||| || ||||||||    
T  26159097 gttctggaccggccaaaaggacttttggctcatttacttaggcccaatacaattcaaagccc 26159158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 26694275 - 26694368
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctc-cttctctactcttgttcttattttaataacttcataac 394  Q
    ||||||| ||||| |||||||||||  ||||| |||||| ||| |||||| ||||  ||||||  ||||||||||||| |||||  ||||||||    
T  26694275 atgtaacctaattatacatcacaagagaataacataatcttctttcttctatctctattctctcttcttgttcttattctaatagtttcataac 26694368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 394
Target Start/End: Original strand, 26702371 - 26702464
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctc-cttctctactcttgttcttattttaataacttcataac 394  Q
    ||||||| ||||| |||||||||||  ||||| |||||| ||| |||||| ||||  ||||||  ||||||||||||| |||||  ||||||||    
T  26702371 atgtaacctaattatacatcacaagagaataacataatcttctttcttctatctctattctctcttcttgttcttattctaatagtttcataac 26702464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 7868121 - 7868189
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    ||||||| ||| ||||||| ||||||| |||||||||||||| |  | |||| |||||||||| |||||    
T  7868121 tgatctagtggttaaaatttactttcccatggtgggaaacaactcccctttctcatgctaaatcccacc 7868189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 44406939 - 44407007
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    ||||||||||| ||||||| ||||||| |||||||||||||| ||||| |||||||||||||| |||||    
T  44406939 tgatctaatgggtaaaatttactttcccatggtgggaaacaactatctattcccatgctaaatgccacc 44407007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 51420928 - 51420858
Alignment:
Q  71 gatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccaccgtt 141  Q
    |||||||||| ||||| | ||||||||||||||| |||||| |  ||||||||||||||||| ||||||||    
T  51420928 gatctaatggttaaaaatgactttcctatggtggaaaacaacttccttttcccatgctaaatgccaccgtt 51420858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 19790593 - 19790537
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacacc 207  Q
    ||||||||||| | | | |||||||||||||||||||||||||||| ||||||||||    
T  19790593 ccaaaaggatcattggcccatttacttaggcccaataccatccaaaacccaaacacc 19790537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 22915352 - 22915284
Alignment:
Q  167 ctcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||||||||||||||||| |||  |||| ||||||||||| |||||||  ||||| || ||||||    
T  22915352 ctcatttacttaggcccaatacaatctgaagcgcaaacaccacgtttgacaagtttacttgcaacacac 22915284  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 13985366 - 13985436
Alignment:
Q  286 tataaatagtgatgacatgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctc 356  Q
    ||||||||| ||| | ||||||| ||||| |||||||||||  |||||||||||| ||| |||||| ||||    
T  13985366 tataaatagagatcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 13985436  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 40802599 - 40802545
Alignment:
Q  302 atgtaacataattgtacatcacaaggtaataatataatcatctctcttctttctc 356  Q
    ||||||| ||||| |||||||||||  |||||||||||||||| |||||| ||||    
T  40802599 atgtaacttaattatacatcacaagagaataatataatcatctttcttctctctc 40802545  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 50305686 - 50305649
Alignment:
Q  72 atctaatggctaaaattaactttcctatggtgggaaac 109  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  50305686 atctaatggctaaaatcaactttcctatggtaggaaac 50305649  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 35458901 - 35458853
Alignment:
Q  84 aaattaactttcctatggtgggaaacaaatatcttttcccatgctaaat 132  Q
    ||||| |||||||||||||||||||||| ||||  ||||||| ||||||    
T  35458901 aaatttactttcctatggtgggaaacaactatccattcccattctaaat 35458853  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 47481221 - 47481289
Alignment:
Q  70 tgatctaatggctaaaattaactttcctatggtgggaaacaaatatcttttcccatgctaaattccacc 138  Q
    ||||||||||| ||||||| ||||| ||||||| | |||||| ||||  ||| |||||||||| |||||    
T  47481221 tgatctaatggataaaatttacttttctatggtagaaaacaactatccattctcatgctaaatgccacc 47481289  T

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Target: scaffold0362 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 7233 - 7333
Alignment:
Q  153 aaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacactcttcccacacgagggg 252  Q
    ||||||||||| | | |||||| ||| | |||||| |||||||||||||||||||| | ||| ||||||||||||| |||||| |   ||||||||||||    
T  7233 aaaaggatctttggcccatttatttatgtccaatatcatccaaagcccaaacaccaagtttggcaaaattactcgcgacacaccccctccacacgagggg 7332  T
Q  253 g 253  Q
    |    
T  7333 g 7333  T

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Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 56229 - 56324
Alignment:
Q  140 ttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||  ||| ||||||| ||| | | |||||||||||||||||||| ||||||||||||||||||||| ||| | || ||||| || ||||||    
T  56229 ttctggactgacaaaaaggacctttggcccatttacttaggcccaatacaatccaaagcccaaacaccacgtttggcgaagttacttgcgacacac 56324  T

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Target: scaffold0026 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 151164 - 151247
Alignment:
Q  142 ctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    ||||| || ||||||||||||| | | |||||||||||||| ||||| ||||||||||||||||| ||| ||| |||| |||||    
T  151164 ctggaccggccaaaaggatctttggcccatttacttaggcctaatacaatccaaagcccaaacactacgtttggcaaacttact 151247  T

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Target: scaffold0083 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 4066 - 4152
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||| || |||||||||| || | |||||||||||||| | ||||| |||||||| |||||||||||| ||| |||| |||||    
T  4066 gttctggaccggccaaaaggatatttggctcatttacttaggtcaaatacaatccaaagtccaaacaccacgtttggcaaacttact 4152  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 391790 - 391694
Alignment:
Q  139 gttctggatcgaccaaaaggatct-tggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| |||||||||||| || ||| | |||||||||||| ||||||| ||||||| ||||||||||||| ||| |||| ||||| || ||||||    
T  391790 gttctggaccgaccaaaaggacctgtggtc-catttacttaggtccaatacaatccaaaccccaaacaccacggttggcaaacttacttgcaacacac 391694  T

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Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 381061 - 381005
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattact 225  Q
    |||||||||| ||||||||| ||||||||||||||||||| | ||| |||| |||||    
T  381061 catttacttacgcccaatacaatccaaagcccaaacaccatggttggcaaacttact 381005  T

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Target: scaffold1272 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1272
Description:

Target: scaffold1272; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 2073 - 1977
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| || |||||||||  || | | ||||||||| || ||||||| || |||||||||||||||||| ||| |||||||||| || ||||||    
T  2073 gttctggaccggccaaaaggagttttggcccatttacttgggtccaatactattcaaagcccaaacaccacgtttggcaaaattacttgcgacacac 1977  T

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Target: scaffold0192 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 12650 - 12554
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    |||||||| || ||||||||| ||| | | |||||||||||||| ||||| || |||||||||||||||||| ||  ||| |||||| || ||||||    
T  12650 gttctggaccggccaaaaggagctttggcccatttacttaggcctaatacaattcaaagcccaaacaccacgttttgcaacattacttgcgacacac 12554  T

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Target: scaffold0084 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 54474 - 54562
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcg 227  Q
    |||||||| || ||||||||||||| | | ||||||||||| ||||||||  | |||||||||||  ||||| ||| ||||||||||||    
T  54474 gttctggaccggccaaaaggatctttggcccatttacttagacccaatacactacaaagcccaaaatccacgtttggcaaaattactcg 54562  T

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Target: scaffold0008 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 242991 - 242907
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||| ||| | | |||||||||||||||||||| ||| ||||||||||||||| | ||| ||| |||||| || ||||||    
T  242991 ccaaaaggacctttgtcccatttacttaggcccaatacaatctaaagcccaaacaccaagtttggcaacattacttgcgacacac 242907  T

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Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 253613 - 253558
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattac 224  Q
    ||||| |||||||||||||| ||||||| ||||||||||||| ||| ||| |||||    
T  253613 cattttcttaggcccaatacaatccaaatcccaaacaccacgtttggcaacattac 253558  T

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Target: scaffold0280 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 910 - 981
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacg 210  Q
    |||||||| ||  |||||||| ||| | | |||||||||||| ||||||| |||||||||||||||||||||    
T  910 gttctggaccggtcaaaaggacctttggcccatttacttaggtccaatacaatccaaagcccaaacaccacg 981  T

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Target: scaffold0483 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 9430 - 9364
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||| || ||||||| || |||||||||||||||||| ||| |||||||||| || ||||||    
T  9430 catttacttgggtccaatactattcaaagcccaaacaccacgtttggcaaaattacttgcgacacac 9364  T

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Target: scaffold0150 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 29927 - 30012
Alignment:
Q  139 gttctggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattac 224  Q
    |||||||| || ||||||||| ||| | | |||||| |||||||||| || |||||||||||||||| |||| ||| |||| ||||    
T  29927 gttctggaccggccaaaaggacctttggcccatttaattaggcccaacacaatccaaagcccaaacagcacgtttggcaaagttac 30012  T

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Target: scaffold0042 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 68991 - 68907
Alignment:
Q  151 ccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||||||| | | |||||||||||||||||||| || ||||||||| || ||||| ||  ||| |||||| || ||||||    
T  68991 ccaaaaggatctttggcccatttacttaggcccaatacaattcaaagcccagactccacgttttgcaacattacttgcgacacac 68907  T

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Target: scaffold0063 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 36664 - 36745
Alignment:
Q  153 aaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacaccacgattgacaaaattactcgccacacac 235  Q
    ||||||||||| | | ||||| |||||| ||||||| |||| ||||||||| |||||| ||| ||| ||||||||| ||||||    
T  36664 aaaaggatcttagtcccattttcttaggtccaatacaatcc-aagcccaaataccacgtttggcaacattactcgcaacacac 36745  T

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Target: scaffold0170 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 16216 - 16253
Alignment:
Q  169 catttacttaggcccaataccatccaaagcccaaacac 206  Q
    |||||||||||||||||||| | |||||||||||||||    
T  16216 catttacttaggcccaatacaacccaaagcccaaacac 16253  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 2702 - 2767
Alignment:
Q  143 tggatcgaccaaaaggatcttggactcatttacttaggcccaataccatccaaagcccaaacacca 208  Q
    |||| |||||||||||| ||| | | ||||||| |||||| ||||| || ||||||||||||||||    
T  2702 tggaccgaccaaaaggagctttggcccatttacataggcctaatacaattcaaagcccaaacacca 2767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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