View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_16 (Length: 395)
Name: NF4299_low_16
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 4110952 - 4110758
Alignment:
| Q |
10 |
gcacagacatgagatttagagtctggcaattttgtctgacaggaacccaaaatctatactttttggtaaagtcaattctgttagtgaaacaaaatacaca |
109 |
Q |
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| T |
4110952 |
gcacagacatgagatttagagtctggcaattttgtctgacaggaacccaaaatctatactttttggtaaagtcaattctgttagtgaaacaaaatacaca |
4110853 |
T |
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| Q |
110 |
taatcttcaatggattgaataaatacccttgtgtgtgattgtgcctgttagtgacgcatttaattttctggaaatattcaatgtctttcaacagg |
204 |
Q |
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| T |
4110852 |
taatcttcaatggattgaataaatacccttgtgtgtgattgtgcctgttagtgacgcatttaattttctggaaatattcaatgtctttcaacagg |
4110758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 201 - 377
Target Start/End: Complemental strand, 4110464 - 4110288
Alignment:
| Q |
201 |
caggaagatatggaaccggaaggtaatgacaacattgcgagtcttgatttgtctcaaccacaggttgccgtgatttctaatggtgagaatggagtctcaa |
300 |
Q |
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| T |
4110464 |
caggaagatatggaaccggaaggtaatgacaacattgcgagtcttgatttgtctcaactacaggttgccgtgatttctaatggtgaaaatggagtctcaa |
4110365 |
T |
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| Q |
301 |
gtgttgctgcagctaaaaatagtcaatctttgatgagggtatttgaatttggtcctacccatgagcccggcagtgtt |
377 |
Q |
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| T |
4110364 |
gtgttgctgcagctaaaaatagtcaatctttgatgagggtatttgaatttggtcctacccatgagccaggcagtgtt |
4110288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 8e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 17650825 - 17651011
Alignment:
| Q |
17 |
catgagatttagagtctggcaattttgtctgacaggaacccaaaatctatactttttggtaaagtcaattctgttagtgaaacaaaatacacataatctt |
116 |
Q |
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| T |
17650825 |
catgagatttagagtccgacaattttgtctgacaggaacccaaa-tctataccttttgacaaaatcaattctattagcgaaacaaaatacacataatctt |
17650923 |
T |
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| Q |
117 |
caatggattgaataaatacccttgtgtgtgattgtgcctgttagtgacgcatttaattttctggaaatattcaatgtctttcaacagg |
204 |
Q |
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| T |
17650924 |
caatggattgaataaatacccttgtgtgtgattgtgtctgttattgacgcatttaattttctggaaatattgaatgtctttcaacagg |
17651011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 201 - 367
Target Start/End: Original strand, 17651347 - 17651513
Alignment:
| Q |
201 |
caggaagatatggaaccggaaggtaatgacaacattgcgagtcttgatttgtctcaaccacaggttgccgtgatttctaatggtgagaatggagtctcaa |
300 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||||||||||| |
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| T |
17651347 |
caggaagatatggaaccggaaggcaataacaacattgcgagtcttgatttgtctcaaccgcaggttgacatgatttctaatggtgaaaatggagtctcaa |
17651446 |
T |
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| Q |
301 |
gtgttgctgcagctaaaaatagtcaatctttgatgagggtatttgaatttggtcctacccatgagcc |
367 |
Q |
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| T |
17651447 |
gtgttgctgcagctgaaaatagtcaatattttatgagtgtatttgaatttgatcctacccatgagcc |
17651513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 17651290 - 17651345
Alignment:
| Q |
201 |
caggaagatatggaaccggaaggtaatgacaacattgcgagtcttgatttgtctca |
256 |
Q |
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| T |
17651290 |
caggaagatatagaacctgaaggtaatgacaacattgcgggtcttaagttgtctca |
17651345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 17651170 - 17651251
Alignment:
| Q |
219 |
gaaggtaatgacaacattgcgagtcttgatttgtctcaaccacaggttgccgtgatttctaatggtgagaatggagtctcaa |
300 |
Q |
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|||||||| |||| ||||||| |||| |||||||||||||| |||| ||||||| ||||||||| |||||| |||||| |
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| T |
17651170 |
gaaggtaacaacaatattgcgaatcttaggttgtctcaaccacatgttggtgtgatttataatggtgaaaatggattctcaa |
17651251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 14698073 - 14697892
Alignment:
| Q |
17 |
catgagatttagagtctggcaattttgtctgacaggaacccaaaatctatactttttggtaaagtcaattctgttagtgaaacaaaatacacataatctt |
116 |
Q |
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| T |
14698073 |
catgagatttagagtccgacaattttgtctgaca------ccaaatctatactttttaacaaaatcaattctattagcgaaacaaaatacgcataatctt |
14697980 |
T |
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| Q |
117 |
caatggattgaataaatacccttgtgtgtgattgtgcctgttagtgacgcatttaattttctggaaatattcaatgtctttcaacagg |
204 |
Q |
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| T |
14697979 |
caatggattgaataaatacccttgtgtgtgattgtgtctgttattgacgcatttaattttctggaaatattgaatgtctttcaacagg |
14697892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 201 - 367
Target Start/End: Complemental strand, 14697556 - 14697390
Alignment:
| Q |
201 |
caggaagatatggaaccggaaggtaatgacaacattgcgagtcttgatttgtctcaaccacaggttgccgtgatttctaatggtgagaatggagtctcaa |
300 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| || ||||||||||||| |
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| T |
14697556 |
caggaagatatggaaccggaaggcaataacaacattgcgagtcttgatttgtctcaaccgcaggttgacatgatttctaatggggaaaatggagtctcaa |
14697457 |
T |
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| Q |
301 |
gtgttgctgcagctaaaaatagtcaatctttgatgagggtatttgaatttggtcctacccatgagcc |
367 |
Q |
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| T |
14697456 |
gtgttgctgcagctgaaaatagtcaaaatttgattagtgtatttgaatttgatcctacctatgagcc |
14697390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 14697613 - 14697558
Alignment:
| Q |
201 |
caggaagatatggaaccggaaggtaatgacaacattgcgagtcttgatttgtctca |
256 |
Q |
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||||||||||| ||||| |||||||||||||||||||| ||||| | |||||||| |
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| T |
14697613 |
caggaagatatagaacctgaaggtaatgacaacattgctggtcttaagttgtctca |
14697558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 14697733 - 14697652
Alignment:
| Q |
219 |
gaaggtaatgacaacattgcgagtcttgatttgtctcaaccacaggttgccgtgatttctaatggtgagaatggagtctcaa |
300 |
Q |
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|||||||| |||| ||||||| |||| |||||||||||||| |||| ||||||| ||||||||| |||||| |||||| |
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| T |
14697733 |
gaaggtaacaacaatattgcgaatcttaggttgtctcaaccacatgttggtgtgatttataatggtgaaaatggattctcaa |
14697652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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